FREGENE: Difference between revisions

From Cheaha
Jump to navigation Jump to search
No edit summary
(added category bioinformatics)
 
(One intermediate revision by the same user not shown)
Line 11: Line 11:
module load fregene/fregene-2008
module load fregene/fregene-2008
</pre>
</pre>
[[Category:Software]][[Category:Bioinformatics]]

Latest revision as of 15:09, 4 April 2012

This page is a Generic stub.

You can help by expanding this page..


FREGENE is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations. Unlike coalescent-based simulation tools, such as MS (Hudson, 2002), FREGENE works forwards-in-time which allows a wide range of demographic and selection scenarios to be implemented. Many such models are already incorporated into FREGENE, and since it is open source users can modify or extend these. Coalescent methods have difficulty incorporating large amounts of gene conversion or crossover (Hoggart et al. 2007), whereas these pose no particular problem for FREGENE. FREGENE offers a flexible model for recombination hotspots, and can readily simulate regions up to tens of Mb on a standard desktop computer.

Project website: http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html

Load SGE module

The following Modules files should be loaded for this package:

module load fregene/fregene-2008