Cheaha software

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Attention: Research Computing Documentation has Moved
https://docs.rc.uab.edu/


Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.


As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

This page shows a list of installed modules on the Cheaha research computing system. This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. This list is current as of March 15th 2012.

Software modules installed on Cheaha

Current as of March 15th 2012
Software Latest Version Other Versions Remarks
EMAN2 2.02
R 2.12.2 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1
RAxML 7.2.6
VEGAS 0.8
affymetrix 1.4.3
amber 10
annovan
apbs 1.0
aspera 2.4.7
atlas
autodock 4.2
birdsuite 1.5.5 1.5.3
bowtie 0.9 0.10,0.12
chase
cuda 4
comsol 4.2
cufflinks 0.9
eigenstrat 2.0
ent 1.0.2
fastphase 1.4
fftw3 gnu/intel
freesurfer 4.5
freegene 2008
fsl 4.1.6
galaxy
genn
gromacs 4.5 4 gnu/intel
gtools 0.6.7