Cheaha software: Difference between revisions

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|hapgen
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|illuminus
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|impute
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|jags
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|lammpi
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|LS-DYNA
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|MACH
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|macs
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|MAQ
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|marthlab
|mosaik 0.9.891
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|[[MATLAB]]
|R2012a
|R2009(a,b),R2010(a,b),R2011(a,b)
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|mpich
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|mrbayes
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|mvapich
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|openmp
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|paraview
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|PDT
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|penncnv
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|PLINK
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|RNA pipeline
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|S.A.G.E.
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|samtools
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|scalemp
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|fftw optimized
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|shrimp
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|solar
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|spparks
|30May11
|07Aug09
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|structure
|2.2
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|tau
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|lam, open mpi
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|[[TopHat]]
|1.1
|1.0.8
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|Varianttools/vtools
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|1.0
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|vmd
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Revision as of 15:19, 15 March 2012

This page shows a list of installed modules on the Cheaha research computing system. This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. This list is current as of March 15th 2012.

Software modules installed on Cheaha

Current as of March 15th 2012
Software Latest Version Other Versions Remarks
EMAN2 2.02
R 2.12.2 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1
RAxML 7.2.6
VEGAS 0.8
affymetrix 1.4.3
amber 10
annovar 2012Feb23
apbs 1.0
aspera 2.4.7
atlas 3.8
autodock 4.2.3
birdsuite 1.5.5 1.5.3
bowtie 0.9 0.10,0.12
chase 1
cuda 4
COMSOL 4.2
cufflinks 0.9
eigenstrat 2.0
ent 1.0.2
fastphase 1.4
fftw 3.1.2 gnu/intel
FreeSurfer 4.5
freegene 2008
Fsl 4.1.6
Galaxy 1.0
genn
Gromacs 4.5 4 gnu/intel
gtools 0.6.7
hapgen 1.3.0
haskell/ghc 6.10.4
illuminus 2
impute 2.1.2 2.1.0, 2.0.3
jags 1.0 gnu
lammpi 7.1 gnu/intel
LS-DYNA 9.7.1
MACH 1.0.16
macs 1.3.6
MAQ 0.7
marthlab mosaik 0.9.891 gigabayes, pyrobayes
MATLAB R2012a R2009(a,b),R2010(a,b),R2011(a,b) DCS-128
mpich 2 1.2 gnu/intel
mrbayes 3.1.2 intel
mvapich 2 gnu
Namd 2.8 2.7,2.6 ibverbs
openmp 1.2 gnu/intel
paraview 3.8 3.12,3.4,3.6
PDT 3.17 3.14
penncnv 2010May01
phase 2.1.1
PLINK 1.07 1.06,1.05
python 2.7 2.6
RNA pipeline 0.5.0 0.31
S.A.G.E. 6.2 6.0
samtools 0.1
scalemp 3.2.2 fftw optimized
shrimp 1.3 1.2
solar 4.3.1
spparks 30May11 07Aug09
structure 2.2
tau 2.21.1 lam, open mpi
TopHat 1.1 1.0.8
Varianttools/vtools 1.0.1 1.0
vmd 1.9.0 1.8.6
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