Cheaha Software: Difference between revisions
Jump to navigation
Jump to search
(edited with out the ccts pakages) |
|||
| Line 5: | Line 5: | ||
==Software modules installed on Cheaha== | ==Software modules installed on Cheaha== | ||
{| border="1" align="center" cellpadding="10" style="text-align:center;" | {| border="1" align="center" cellpadding="10" style="text-align:center;" | ||
|+ Last updated ''' | |+ Last updated '''Feb 12th 2014''' | ||
! Software | ! Software | ||
! Latest Version | ! Latest Version | ||
| Line 17: | Line 17: | ||
|- | |- | ||
|'''[[Affymetrix]]''' | |'''[[Affymetrix]]''' | ||
|1. | |1.14.3 | ||
| | | | ||
| | | | ||
| Line 88: | Line 88: | ||
|'''[[Cufflinks]]''' | |'''[[Cufflinks]]''' | ||
|0.9 | |0.9 | ||
| | |||
| | |||
|- | |||
|'''[[DSSP]]''' | |||
|2.0.4 | |||
| | |||
| | |||
|- | |||
|'''[[Eclipse]]''' | |||
|4.3.1 | |||
| | | | ||
| | | | ||
| Line 127: | Line 137: | ||
|- | |- | ||
|'''[[Fsl]]''' | |'''[[Fsl]]''' | ||
|5.0.6 | |||
|4.1.6 | |4.1.6 | ||
| | | | ||
|- | |- | ||
| Line 177: | Line 187: | ||
|- | |- | ||
|'''[[IMPUTE2]]''' | |'''[[IMPUTE2]]''' | ||
|2.1.2 | |2.3.0 | ||
|2.1.2,2.1.0, 2.0.3 | |||
| | | | ||
|- | |- | ||
| Line 268: | Line 278: | ||
|'''[[PennCNV]]''' | |'''[[PennCNV]]''' | ||
|2010May01 | |2010May01 | ||
| | |||
| | |||
|'''[[petsc]]''' | |||
|3.4.3 | |||
| | | | ||
| | | | ||
Revision as of 22:03, 17 February 2014
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.
Software modules installed on Cheaha
| Software | Latest Version | Other Versions | Remarks | ||||
|---|---|---|---|---|---|---|---|
| AFNI | AFNI_Jun_25_2013 | AFNI_2011_12_21_1014 | linux openmp 64, linux Xorg7 64 | ||||
| Affymetrix | 1.14.3 | ||||||
| Amber | 10 | ||||||
| ANNOVAR | 2012Feb23 | ||||||
| ANSYS | 14.5 | 14.0 | |||||
| APBS | 1.0 | ||||||
| Aspera | 2.4.7 | ||||||
| Atlas | 3.8 | ||||||
| AutoDock | 4.2.3 | ||||||
| Birdsuite | 1.5.5 | 1.5.3 | |||||
| Bowtie | 0.9 | 0.10,0.12 | |||||
| CHASE | 1 | ||||||
| cmake | 2.8.10.2 | ||||||
| CUDA | 4 | ||||||
| COMSOL | 4.2 | ||||||
| Cufflinks | 0.9 | ||||||
| DSSP | 2.0.4 | ||||||
| Eclipse | 4.3.1 | ||||||
| eigenstrat | 2.0 | ||||||
| EMAN2 | 2.02 | ?? | |||||
| ENT | 1.0.2 | ||||||
| fastPHASE | 1.4 | ||||||
| FFTW | 3.1.2 | gnu/intel | |||||
| FreeSurfer | 5.3.0 | 4.5,5.2.0 | |||||
| FREGENE | 2008 | ||||||
| Fsl | 5.0.6 | 4.1.6 | |||||
| Galaxy | 1.0 | ||||||
| gcc | 4.8.1 | ||||||
| genn | |||||||
| Gromacs | 4.6.1 | 4,4.5 | gnu/intel | ||||
| GTOOL | 0.6.7 | ||||||
| HAPGEN | 1.3.0 | ||||||
| Haskell/GHC | 6.10.4 | ||||||
| HYPERWORKS | 12.0 | ||||||
| Illuminus | 2 | ||||||
| IMPUTE2 | 2.3.0 | 2.1.2,2.1.0, 2.0.3 | |||||
| JAGS | 1.0 | gnu | |||||
| LAM-MPI | 7.1 | gnu/intel | |||||
| LS-DYNA | 9.7.1 | ||||||
| MACH | 1.0.16 | ||||||
| MACS | 1.3.6 | ||||||
| Magma | 5.2 | ||||||
| Maq | 0.7.1 | ||||||
| MarthLab | mosaik 0.9.891 | gigabayes, pyrobayes | |||||
| MATLAB | R2013a | R2009(a,b),R2010(a,b),R2011(a,b),R2012a | DCS-128 | ||||
| MPICH | 2 | 1.2 | gnu/intel | ||||
| mplayer | 1.1.1 | ||||||
| MrBayes | 3.1.2 | intel | |||||
| MVAPICH | 2 | gnu | |||||
| Namd | 2.9 | 2.8,2.7,2.6 | ibverbs | ||||
| OpenMPI | 1.6.4 | 1.2 | gnu/intel | ||||
| ParaView | 3.12 | 3.4,3.6,3.8 | |||||
| PDT | 3.19 | 3.14,3.17 | |||||
| PennCNV | 2010May01 | petsc | 3.4.3 | ||||
| PHASE | 2.1.1 | ||||||
| PLINK | 1.07 | 1.06,1.05 | |||||
| Python | 2.7 | 2.6 | |||||
| R | 3.0.1 | 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0,2.15.3,3.0.0 | |||||
| RAxML | 7.2.6 | ||||||
| RNA pipeline | 0.5.0 | 0.31 | |||||
| S.A.G.E. | 6.2 | 6.0 | |||||
| SAMtools | 0.1 | ||||||
| ScaleMP | 3.2.2 | fftw optimized | |||||
| SHRiMP | 1.3 | 1.2 | |||||
| SOLAR | 4.3.1 | ||||||
| SPPARKS | 30May11 | 07Aug09 | |||||
| Structure | 2.2 | ||||||
| TAU | 2.22.2 | 2.21.1 | lam, open mpi | ||||
| TopHat | 1.1 | 1.0.8 | |||||
| varianttools | 1.0.1 | 1.0 | |||||
| VEGAS | 0.8 | ||||||
| VMD | 1.9.0 | 1.8.6 |