Cheaha Software: Difference between revisions
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(changed "current" to "last updated" so as not to imply that the page was 100% accurate as of that date) |
(→Software modules installed on Cheaha: Updated AFNI, R, Matlab versions) |
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|'''[[AFNI]]''' | |'''[[AFNI]]''' | ||
|AFNI_Jun_25_2013 | |||
|AFNI_2011_12_21_1014 | |AFNI_2011_12_21_1014 | ||
|linux openmp 64, linux Xorg7 64 | |||
|linux openmp 64 | |||
|- | |- | ||
|'''[[Affymetrix]]''' | |'''[[Affymetrix]]''' | ||
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|- | |- | ||
|'''[[ANSYS]]''' | |'''[[ANSYS]]''' | ||
|14.5 | |||
|14.0 | |14.0 | ||
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|- | |- | ||
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|'''[[CHASE]]''' | |'''[[CHASE]]''' | ||
|1 | |1 | ||
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|- | |||
|'''[[cmake]]''' | |||
|2.8.10.2 | |||
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|'''[[FreeSurfer]]''' | |'''[[FreeSurfer]]''' | ||
|5. | |5.3.0 | ||
| | |4.5,5.2.0 | ||
| | | | ||
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| Line 128: | Line 133: | ||
|'''[[Galaxy]]''' | |'''[[Galaxy]]''' | ||
|1.0 | |1.0 | ||
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|- | |||
|'''[[gcc]]''' | |||
|4.8.1 | |||
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| Line 153: | Line 163: | ||
|'''[[Haskell/GHC]]''' | |'''[[Haskell/GHC]]''' | ||
|6.10.4 | |6.10.4 | ||
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| | |||
|- | |||
|'''[[HYPERWORKS]]''' | |||
|12.0 | |||
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|- | |- | ||
|'''[[MATLAB]]''' | |'''[[MATLAB]]''' | ||
| | |R2013a | ||
|R2009(a,b),R2010(a,b),R2011(a,b),R2012a | |R2009(a,b),R2010(a,b),R2011(a,b),R2012a | ||
|DCS-128 | |DCS-128 | ||
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|1.2 | |1.2 | ||
|gnu/intel | |gnu/intel | ||
|- | |||
|'''[[mplayer]]''' | |||
|1.1.1 | |||
| | |||
| | |||
|- | |- | ||
|'''[[MrBayes]]''' | |'''[[MrBayes]]''' | ||
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|'''[[OpenMPI]]''' | |'''[[OpenMPI]]''' | ||
|1.6.4 | |1.6.4 | ||
| | |1.2 | ||
|gnu/intel | |gnu/intel | ||
|- | |- | ||
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|- | |- | ||
|'''[[PDT]]''' | |'''[[PDT]]''' | ||
|3. | |3.19 | ||
|3.14 | |3.14,3.17 | ||
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| Line 267: | Line 287: | ||
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|'''[[R]]''' | |'''[[R]]''' | ||
| | |3.0.1 | ||
|2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0 | |2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0,2.15.3,3.0.0 | ||
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| Line 317: | Line 337: | ||
|- | |- | ||
|'''[[TAU]]''' | |'''[[TAU]]''' | ||
|2.22.2 | |||
|2.21.1 | |2.21.1 | ||
|lam, open mpi | |lam, open mpi | ||
|- | |- | ||
Revision as of 12:52, 8 August 2013
This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.
This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.
Software modules installed on Cheaha
| Software | Latest Version | Other Versions | Remarks |
|---|---|---|---|
| AFNI | AFNI_Jun_25_2013 | AFNI_2011_12_21_1014 | linux openmp 64, linux Xorg7 64 |
| Affymetrix | 1.4.3 | ||
| Amber | 10 | ||
| ANNOVAR | 2012Feb23 | ||
| ANSYS | 14.5 | 14.0 | |
| APBS | 1.0 | ||
| Aspera | 2.4.7 | ||
| Atlas | 3.8 | ||
| AutoDock | 4.2.3 | ||
| Birdsuite | 1.5.5 | 1.5.3 | |
| Bowtie | 0.9 | 0.10,0.12 | |
| CHASE | 1 | ||
| cmake | 2.8.10.2 | ||
| CUDA | 4 | ||
| COMSOL | 4.2 | ||
| Cufflinks | 0.9 | ||
| eigenstrat | 2.0 | ||
| EMAN2 | 2.02 | ?? | |
| ENT | 1.0.2 | ||
| fastPHASE | 1.4 | ||
| FFTW | 3.1.2 | gnu/intel | |
| FreeSurfer | 5.3.0 | 4.5,5.2.0 | |
| FREGENE | 2008 | ||
| Fsl | 4.1.6 | ||
| Galaxy | 1.0 | ||
| gcc | 4.8.1 | ||
| genn | |||
| Gromacs | 4.6.1 | 4,4.5 | gnu/intel |
| GTOOL | 0.6.7 | ||
| HAPGEN | 1.3.0 | ||
| Haskell/GHC | 6.10.4 | ||
| HYPERWORKS | 12.0 | ||
| Illuminus | 2 | ||
| IMPUTE2 | 2.1.2 | 2.1.0, 2.0.3 | |
| JAGS | 1.0 | gnu | |
| LAM-MPI | 7.1 | gnu/intel | |
| LS-DYNA | 9.7.1 | ||
| MACH | 1.0.16 | ||
| MACS | 1.3.6 | ||
| Magma | 5.2 | ||
| Maq | 0.7.1 | ||
| MarthLab | mosaik 0.9.891 | gigabayes, pyrobayes | |
| MATLAB | R2013a | R2009(a,b),R2010(a,b),R2011(a,b),R2012a | DCS-128 |
| MPICH | 2 | 1.2 | gnu/intel |
| mplayer | 1.1.1 | ||
| MrBayes | 3.1.2 | intel | |
| MVAPICH | 2 | gnu | |
| Namd | 2.9 | 2.8,2.7,2.6 | ibverbs |
| OpenMPI | 1.6.4 | 1.2 | gnu/intel |
| ParaView | 3.12 | 3.4,3.6,3.8 | |
| PDT | 3.19 | 3.14,3.17 | |
| PennCNV | 2010May01 | ||
| PHASE | 2.1.1 | ||
| PLINK | 1.07 | 1.06,1.05 | |
| Python | 2.7 | 2.6 | |
| R | 3.0.1 | 2.6.2,2.7.2,2.8.1,2.9.0,2.9.2,2.11.1,2.12.2,2.14.2,2.15.0,2.15.3,3.0.0 | |
| RAxML | 7.2.6 | ||
| RNA pipeline | 0.5.0 | 0.31 | |
| S.A.G.E. | 6.2 | 6.0 | |
| SAMtools | 0.1 | ||
| ScaleMP | 3.2.2 | fftw optimized | |
| SHRiMP | 1.3 | 1.2 | |
| SOLAR | 4.3.1 | ||
| SPPARKS | 30May11 | 07Aug09 | |
| Structure | 2.2 | ||
| TAU | 2.22.2 | 2.21.1 | lam, open mpi |
| TopHat | 1.1 | 1.0.8 | |
| varianttools | 1.0.1 | 1.0 | |
| VEGAS | 0.8 | ||
| VMD | 1.9.0 | 1.8.6 |