Brain Core

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Attention: Research Computing Documentation has Moved
https://docs.rc.uab.edu/


Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.


As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

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CINL Brain Core Mission

CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.

The 5 aims of the Brain Core

Visual Brain Core Poster

Information For CINL Brain Core

CINL Brain Core Personnel and Office Hours

  • Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues.
    • Office Hours:
    • Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.
    • Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.

CINL Brain Core Seminar Series and Neuroimaging Journal Club

Brain Core seminar series includes high level speakers usually from outside UAB. Every third Friday at noon in CIRC 120. We will discuss new ideas and techniques in brain imaging.

The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. List of speakers in Visual Brain Core Seminar Series

For Use in Grant Proposals:

The CINL Brain Core is supported by users. For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: Grant Proposal Language.

Mailing List:

To subscribe to the VBC mailing list, click here (and send the email without any changes) or send an email to sympa@vo.uabgrid.uab.edu with the following text in the body of the email subscribe vbc

BrainhackUAB

Other information

Neuroimaging at UAB

UAB Neuroimaging Facilities

Civitan International Neuroimaging Laboratory

UAB-HSF MEG Laboratory

Small Animal Imaging Shared Facility

Equipment for collecting behavioral data during Neuroimaging

Neuroimaging and Systems Neuroscience Labs at UAB

(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)

Here is a partial list of manuscripts that have resulted from CINL and Visual Brain Core resources.

Cluster Computing Environment at UAB: Cheaha

  • Cheaha_GettingStarted - information on getting an account and learning about how to use the cluster
  • Cheaha - background information on the cluster useful for grants and publications

UAB-Auburn University Collaboration for Neuroimaging

Auburn University MRI Research Center Siemens Magnetom 7T

UAB & Auburn Neuroimaging Journal Club

  • Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu

UAB & Auburn Neuroimaging Retreat

Photos

How To...

Computer and coding related how-to's

Using Linux

Matlab

Psychtoolbox

Coding Help

[Saving Data in Box]

fMRI related how-to's and important links

General Information

Tools

Brain atlases

Cool Websites for Beginners

fMRI statistics

UAB Neuroimaging Tools and How-To's (requires blazer id)

Imaging Protocols

Analysis Scripts

Behavioral data analysis techniques

Institutional Review Board

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