Bowtie: Difference between revisions

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[http://bowtie-bio.sourceforge.net/tutorial.shtml Bowtie]is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq  and SOAP but is substantially faster.
[http://bowtie-bio.sourceforge.net/tutorial.shtml Bowtie]is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq  and SOAP but is substantially faster.


A Bowtie tutorial is available here: http://bowtie-bio.sourceforge.net/tutorial.shtml
'''Project website:'''  http://bowtie-bio.sourceforge.net/tutorial.shtml


====Load SGE module====
The following Modules files should be loaded for this package:
The following Modules files should be loaded for this package:
<pre>
<pre>
module load bowtie/bowtie-0.10
module load bowtie/bowtie-0.10
</pre>
</pre>
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]

Latest revision as of 15:05, 4 April 2012

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Bowtieis an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.

Project website: http://bowtie-bio.sourceforge.net/tutorial.shtml

Load SGE module

The following Modules files should be loaded for this package:

module load bowtie/bowtie-0.10