2011 HPC Boot Camp

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(Agenda: Adjusted Thomas' talk to reflect focus on workflows)
(Agenda: Adjust talk order and tune topics for restful and overview)
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1:00-2:00 - Research Computing Resources Session
 
1:00-2:00 - Research Computing Resources Session
  
* 1:00 - 1:20  Overview of Research Computing Rources -- Cluster on demand
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* 1:00 - 1:20  Overview of Research Computing Resources
* 1:20 - 1:40 Hadoop overview
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* 1:20 - 1:40  Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
* 1:40 - 2:00 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
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* 1:40 - 2:00  Hadoop on Cheaha
  
 
2:00-2:10 - break
 
2:00-2:10 - break
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* 2:10 - 2:40 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
 
* 2:10 - 2:40 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
* 2:40 - 3:00 - RESTful Web Programming
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* 2:40 - 3:00 - RESTful Web Service Interfaces
 
* 3:00 - 3:30 - MatLab for Managing Workflows -- Thomas Anthony, ITRC - SoE
 
* 3:00 - 3:30 - MatLab for Managing Workflows -- Thomas Anthony, ITRC - SoE
  
 
[[Category:RCDay2011]]
 
[[Category:RCDay2011]]

Revision as of 11:25, 9 September 2011

The UAB HPC Bootcamp is being held in conjunction with the UAB Research Computing Day 2011. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm.

Registration

Registration is requested by Wednesday September 14th to attend this event. Please register here

Agenda

8:30-9:00 Registration and Refreshments

9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing

9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys

  • 9:05 - 9:20 Logging in and uploading data to Galaxy
  • 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS
  • 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS
  • 10:30 - 11:00 Galaxy Workflows & Advanced Topics

11:00-1:00 Lunch on your own

1:00-2:00 - Research Computing Resources Session

  • 1:00 - 1:20 Overview of Research Computing Resources
  • 1:20 - 1:40 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
  • 1:40 - 2:00 Hadoop on Cheaha

2:00-2:10 - break

2:10-3:20 - Developing Research Computing Solutions Session

  • 2:10 - 2:40 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
  • 2:40 - 3:00 - RESTful Web Service Interfaces
  • 3:00 - 3:30 - MatLab for Managing Workflows -- Thomas Anthony, ITRC - SoE
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