2011 HPC Boot Camp

From UABgrid Documentation
(Difference between revisions)
Jump to: navigation, search
(Adding section on logging in and uploading data to galaxy)
(Agenda: Add registration time)
Line 6: Line 6:
  
 
== Agenda ==
 
== Agenda ==
 +
 +
8:30-9:00 Registration and Refreshments
  
 
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing
 
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing

Revision as of 09:35, 9 September 2011

The UAB HPC Bootcamp is being held in conjunction with the UAB Research Computing Day 2011. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm.

Registration

Registration is requested by Wednesday September 14th to attend this event. Please register here

Agenda

8:30-9:00 Registration and Refreshments

9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing

9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys

  • 9:05 - 9:20 Logging in and uploading data to Galaxy
  • 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS
  • 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS
  • 10:30 - 11:00 Galaxy Workflows & Advanced Topics

11:00-1:00 Lunch on your own

1:00-2:00 - Research Computing Resources Session

  • 1:00 - 1:20 Overview of Research Computing Rources -- Cluster on demand
  • 1:20 - 1:40 Hadoop overview
  • 1:40 - 2:00 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing

2:00-2:10 - break

2:10-3:20 - Developing Research Computing Solutions Session

  • 2:10 - 2:30 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
  • 2:30 - 2:50 - Example Research workflow
  • 2:50 - 3:10 - RESTful Web Programming
  • 3:10 - 3:30 - How-to Use MatLab DCS -- Thomas Anthony, ITRC - SoE
Personal tools
Namespaces

Variants
Actions
Navigation
Toolbox