OOD IGV

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Revision as of 20:11, 15 October 2019 by Curtish@uab.edu (talk | contribs) (add graffiti around terminal start icon)
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Attention: Research Computing Documentation has Moved
https://docs.rc.uab.edu/


Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.


As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.

Thank you,

The Research Computing Team

First time setup

  1. get a cheaha account (see Cheaha_GettingStarted)
  2. launch an interactive desktop with OOD https://rc.uab.edu

* Requst an OOD Desktop

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* Set Request RAM and HOURS

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* Open the desktop, once running

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* desktop open

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  1. start a "Terminal"
 * open terminal app B.ood with terminal highlight.jpg
  1. in terminal, enter /share/apps/ngs-ccts/ood-igv/2.5.sh

* enter path to installer

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  1. that will install IGV locally, and launch it.
 * installer will scroll a lot of text, some in alarming colors. 
 * a few seconds after the text stop, the desktop icon and loading bar will appear

* installer finished, IGV loading

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Running later

  1. Setup should create a desktop icon called "IGV-2.5.sh"

*

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  1. In the future, you can just start OOD, then click on "IGV-2.5.sh"

*

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Script source code

Code can be found at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines/ood-igv

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