Talk:NAMD Benchmarks

From Cheaha
Jump to navigation Jump to search

Benchmark introduction Calculation of efficiency Scaling to higher processor count- Calculation for scaling

Sample Benchmark using NAMD

Sample Benchmark comparing Days/ns for Cheaha, Biowulf, and DMC using InfiniBand

Days/ns (efficiency) on Cheaha, Biowulf, and DMC
Processors Cheaha Biowulf DMC
1 15.4054 (100%) 18.0535 (100%) 19.1000 (100%)
2 7.7119 (99.87%) 9.5163 (94.86%) 9.7600 (97.84%)
4 3.8933 (98.92%) 4.9222 (91.69%) 4.7570 (100.3%)*
8 1.9653 (97.98%) 2.5763 (87.59%) 2.5360 (94.14%)
16 0.9950 (96.76%) 1.2658 (89.14%) 1.3870 (86.06%)
32 0.5101 (94.37%) 0.6463 (87.29%) 0.7438 (80.24%)
64 0.2592 (92.83%) 0.3390 (83.22%) 0.3938 (75.78%)
128 0.1360 (88.45%) NA NA
256 0.0770 (78.09%) NA NA
NAMD benchmark img1 Days cheaha dmc biowulf.png
NAMD benchmark img2 Efficiency cheaha dmc biowulf.png

Graph's

Efficiency

Bench mark notes

Comparison of Ethernet and IB

Comparison on different nodes on Cheaha Gen 2 and Gen 3 with IB

Actual job benchmarks (Segrest job)

Perform Your Own Benchmarks

Retrieved from "https://docs.uabgrid.uab.edu/w/index.php?title=Talk:NAMD_Benchmarks&oldid=2776"