2011 HPC Boot Camp
https://docs.rc.uab.edu/
Please use the new documentation url https://docs.rc.uab.edu/ for all Research Computing documentation needs.
As a result of this move, we have deprecated use of this wiki for documentation. We are providing read-only access to the content to facilitate migration of bookmarks and to serve as an historical record. All content updates should be made at the new documentation site. The original wiki will not receive further updates.
Thank you,
The Research Computing Team
The UAB HPC Bootcamp is being held in conjunction with the UAB Research Computing Day 2011. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm.
Registration
Registration is requested by Wednesday September 14th to attend this event. Please register here
Agenda
8:30-9:00 Registration and Refreshments
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing
9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys
- 9:05 - 9:20 Logging in and uploading data to Galaxy
- 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS
- 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS
- 10:30 - 11:00 Galaxy Workflows & Advanced Topics
11:00-1:00 Lunch on your own
1:00-2:00 - Research Computing Resources Session
- 1:00 - 1:20 Overview of Research Computing Rources -- Cluster on demand
- 1:20 - 1:40 Hadoop overview
- 1:40 - 2:00 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
2:00-2:10 - break
2:10-3:20 - Developing Research Computing Solutions Session
- 2:10 - 2:30 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
- 2:30 - 2:50 - Example Research workflow
- 2:50 - 3:10 - RESTful Web Programming
- 3:10 - 3:30 - How-to Use MatLab DCS -- Thomas Anthony, ITRC - SoE