Cron

Cron

What Is Cron?

Cron is a unix time based job scheduler tool used to schedule command execution at a specified time interval.

Overview

A crontab file houses instructions to the cron daemon of the basic form: "run this command at this time on this date". Each user can have their own crontab file.

Crontab Syntax

crontab [ -u user ] file
crontab [ -u user ] { -l | -r | -e }
crontab [ -u user ] [ -i ] { -e | -l | -r }
crontab [ -u user ] [ -l | -r | -e ] [-i] [-s]

Cron Expression Table

Cron actions are driven by a crontab file, also known as a "cron table". The user's crontab file is a configuration file that specifies shell commands to run at a given schedule.

Every crontab file consists of two parts: a schedule and a command. Here is a look into the scheduling syntax:

# ┌───────────── minute (0 - 59)
# │ ┌───────────── hour (0 - 23)
# │ │ ┌───────────── day of the month (1 - 31)
# │ │ │ ┌───────────── month (1 - 12)
# │ │ │ │ ┌───────────── day of the week (0 - 6) (Sunday to Saturday;
# │ │ │ │ │                                   7 is also Sunday on some systems)
# │ │ │ │ │
# │ │ │ │ │
# * * * * * <command to execute>

A crontab file has five fields; each field is represented by an asterisk to determine the data and time of a certain task.

Crontab Options

To install, update, or edit a job in crontab, use the -e option.

$ crontab -e

To list crontab entires, use the -l option

$ crontab -l

To remove a job from crontab, use the -r option

$ crontab -r

To remove confirm removing a job from crontab, use the -i option

$ crontab -i -r

To add SELINUX security to a crontab file,

$ crontab -s

To edit another user's crontab file, use the user -u option and specify the username

$ crontab -u username -e

To list other user crontab entries

$ crontab -u username -l

NOTE: By default, cron uses vim to edit the crontab file. If you're not familiar with Vi/Vim, use the following command in Cheaha to go through a brief tutorial:

$ vimtutor

Examples

Using Cron to Initiate An Sbatch To Run A Bash Script

Bash Script

#!/bin/bash

# resources 
#SBATCH cpus-per-task=1
#SBATCH mem-per-cpu=4G
#SBATCH array=-1%1
#SBATCH partition=express

# job name, error and output files
#SBATCH --job-name=cron-job
#SBATCH error=err_%j_4a.log
#SBATCH output=out_%j_%4a.log
#SBATCH ntasks=1

# email address to request notifications when the job is complete or if it fails
#SBATCH --mail-type=FAIL
#SBATCH --mail-user=$blazerid@uab.edu


# store text file in the home directory
echo "hi" > $HOME/test.txt 

Crontab File

#!/usr/bin/env
# run generate_data.py  
# git add, commit, and push

MAILTO=blazerid@uab.edu

#git add data.csv
#git commit -m "update data"
#git push

# submit script to queuing system 
# runs cronjob.sh every minute of every day
* * * * * /cm/shared/apps/slurm/18.08.9/bin/sbatch /data/user/user_id/project_dir/cronjob.sh

The first line in the cron configuration file (crontab file) is the shebang. When this file is executed, if the file content beings with #!, the kernel executes the file specified on the #! line and passes the original file as an argument. Essentially, the shebang tells the terminal which program to use to run your scripts if your script is an executable file.

#!/usr/bin/env