Maq
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Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. It is particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.
Project website: http://maq.sourceforge.net/maq-man.shtml
Load SGE module
The following Modules files should be loaded for this package:
module load maq/maq-0.7