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This special page shows all uploaded files.
| Date | Name | Thumbnail | Size | User | Description | Versions |
|---|---|---|---|---|---|---|
| 20:06, 15 September 2011 | SamBamFileFormatFlags.jpg (file) |  |
42 KB | Ozborn@uab.edu | SAM format flags | 1 |
| 19:40, 15 September 2011 | FastQTrimmerRun.jpg (file) |  |
23 KB | Ozborn@uab.edu | CMV 21950R being trimmed from 3' | 1 |
| 19:25, 15 September 2011 | DrawQualityScoreBoxplot.jpg (file) |  |
10 KB | Ozborn@uab.edu | Run box plot | 2 |
| 19:21, 15 September 2011 | QualityStatsResults.jpg (file) |  |
27 KB | Ozborn@uab.edu | 1 | |
| 19:17, 15 September 2011 | RunComputeQualityStats.jpg (file) |  |
9 KB | Ozborn@uab.edu | 1 | |
| 18:47, 15 September 2011 | FastQCRunSettings.jpg (file) |  |
22 KB | Ozborn@uab.edu | 1 | |
| 18:08, 15 September 2011 | DataLibraryVacWRFastQ.jpg (file) |  |
56 KB | Ozborn@uab.edu | 1 | |
| 15:55, 15 September 2011 | PileupFiltering100Reads.jpg (file) |  |
45 KB | Ozborn@uab.edu | Pileup run settings for Vaccinia WR | 1 |
| 05:11, 15 September 2011 | FilterRunVacWR.jpg (file) |  |
13 KB | Ozborn@uab.edu | How to filter a SAM file for SNPs versus reference | 1 |
| 04:21, 15 September 2011 | SNPEffResults.jpg (file) |  |
16 KB | Ozborn@uab.edu | SNP Results for Vaccinia WR | 1 |
| 04:18, 15 September 2011 | SNPEffCoverage.jpg (file) |  |
69 KB | Ozborn@uab.edu | For a vaccinia WR | 1 |
| 03:45, 15 September 2011 | SNPEff.jpg (file) |  |
54 KB | Ozborn@uab.edu | SNPEff run settings | 1 |
| 03:08, 15 September 2011 | GeneratePileup.jpg (file) |  |
56 KB | Ozborn@uab.edu | Generate pileup for Vaccinia, call consensus | 1 |
| 22:35, 14 September 2011 | Sam2bam.jpg (file) |  |
12 KB | Ozborn@uab.edu | Conversion of SAM file to BAM | 1 |
| 22:35, 14 September 2011 | Flagstat.jpg (file) |  |
14 KB | Ozborn@uab.edu | Flag stat on BAM files | 1 |
| 21:52, 14 September 2011 | Bwa run cmv 227r.jpg (file) |  |
52 KB | Ozborn@uab.edu | BWA run of VAC WR CMV 227R | 1 |
| 21:33, 14 September 2011 | Bwa run cmv 21950r.jpg (file) |  |
49 KB | Ozborn@uab.edu | Running BWA on CMV 21950R in UAB Galaxy | 1 |
| 21:08, 14 September 2011 | Cmv21950r 3 1 original boxplot.jpg (file) |  |
60 KB | Ozborn@uab.edu | 2 | |
| 20:58, 14 September 2011 | Cmv21950r 3 1 trimmed boxplot.jpg (file) |  |
58 KB | Ozborn@uab.edu | CMV 21950R after trimming one base off the end. | 1 |
| 20:25, 14 September 2011 | ComputeQualityStatsCMV21950R 3 1.jpg (file) |  |
86 KB | Ozborn@uab.edu | Image of running computation of quality stats | 1 |
| 22:31, 13 September 2011 | CMV VAC WR 3 2 base quality.jpg (file) |  |
57 KB | Ozborn@uab.edu | CMV_VAC_WR_3_2 box and whiskers plot from FastQC | 1 |
| 21:31, 13 September 2011 | DataType.jpg (file) |  |
49 KB | Ozborn@uab.edu | Data attributes for a vaccinia virus fastq file from the history pane. | 1 |
| 21:29, 13 September 2011 | Ha gsl insert group.png (file) |  |
79 KB | Curtish@uab.edu | Example insert fragment length file from HudsonAlpha GSL | 1 |
| 21:26, 13 September 2011 | HistoryPane.jpg (file) |  |
25 KB | Ozborn@uab.edu | What your history pane should look like after linking in the data. | 1 |
| 17:51, 13 September 2011 | UploadLinkDataFilesGUI.jpg (file) |  |
98 KB | Ozborn@uab.edu | Picture of linking in directory of files to use in Galaxy | 1 |
| 19:52, 9 September 2011 | Rcday2011-flyer.pdf (file) |  |
43 KB | Ppreddy@uab.edu | 2011 Research Computing Day (Sep 15) and HPC Bootcamp (Sep 16) flyer | 1 |
| 16:19, 9 September 2011 | CI agenda 15Sept2011.pdf (file) | |
98 KB | Jpr@uab.edu | Research Computing Day September 15, 2011, Agenda Handout | 1 |
| 14:30, 7 September 2011 | Cheaha parallel config.png (file) |  |
96 KB | Tanthony@uab.edu | new version without Thomas Anthony in the data location path | 2 |
| 14:17, 7 September 2011 | 2011 config mngr.png (file) |  |
142 KB | Tanthony@uab.edu | Maltab config manager new.. R2011 a | 1 |
| 14:15, 7 September 2011 | Matlab-configuration-manager.jpg (file) |  |
60 KB | Tanthony@uab.edu | new version of config manager R2011a | 2 |
| 14:10, 7 September 2011 | Validation.png (file) |  |
62 KB | Tanthony@uab.edu | new version of validation | 2 |
| 15:08, 24 August 2011 | HighAvailabilityOverview-MySQL-HA-Solutions-20110823.pdf (file) | |
127 KB | Ppreddy@uab.edu | Overview of HA - components, solutions, and environments. Also has notes regarding each of the components of HA | 1 |
| 18:31, 26 July 2011 | Neuroimaging.jpg (file) |  |
51 KB | Nhutche@uab.edu | 1 | |
| 16:45, 15 July 2011 | Developing-uab-cloud.pdf (file) | |
1.95 MB | Jpr@uab.edu | UAB CI Day 2010, Developing the UAB Cloud presentation | 1 |
| 16:41, 15 July 2011 | Uab-research-core-day-2010-horz-final.pdf (file) | |
5.11 MB | Jpr@uab.edu | Poster from UAB Research Core Day highlighting UAB IT Research Computing Support | 1 |
| 18:15, 14 June 2011 | Gromacs benchmark img3 Gromacs ns.png (file) |  |
19 KB | Tanthony@uab.edu | Page: Gromacs Benchmark, image 3 Ns/day speedup GFLops Cheaha DMC and Biowulf | 1 |
| 17:57, 14 June 2011 | Gromacs Benckmark img2 Gromacs efficiency.png (file) |  |
8 KB | Tanthony@uab.edu | Page: Gromacs Bench mark, Image 2, Efficiency Cheaha DMC Biowulf | 1 |
| 17:42, 14 June 2011 | Gromacs Benchmark img1 Gromacs wall.png (file) |  |
19 KB | Tanthony@uab.edu | page: Gromacs Benchmarks image 1 Gromacs wall time cheaha dmc and biowulf | 1 |
| 19:45, 3 June 2011 | Crazy eeg.jpg (file) |  |
9 KB | Nhutche@uab.edu | 1 | |
| 16:07, 31 May 2011 | NAMD benchmark image 6 Effciency combined AM.png (file) |  |
17 KB | Tanthony@uab.edu | 4 | |
| 16:52, 26 May 2011 | NAMD benchmark img6 Efficiency gen2 gen3 ib.png (file) |  |
7 KB | Tanthony@uab.edu | Page: NAMD benchmark image 6 Efficiency Gen 2 and Gen 3 Cheaha 2.8 IB | 1 |
| 16:50, 26 May 2011 | NAMD benchmark img5 Days gen2 gen3 infiniband.png (file) |  |
7 KB | Tanthony@uab.edu | Page: NAMD Benchmark image 5 Days/ns Gen 2 Gen 3 hardware on Cheaha 2.8 IB | 1 |
| 16:19, 26 May 2011 | NAMD benchmark img4 Ib eth efficiency 2.8.png (file) |  |
7 KB | Tanthony@uab.edu | Page: NAMD benchmark image 4 Inifiniband vs ethernet efficiency 2.8 | 1 |
| 16:17, 26 May 2011 | NAMD benchmark img3 Ib eth days ns 2.8.png (file) |  |
7 KB | Tanthony@uab.edu | Page: NAMD benchmark image 3 Infiniband vs ethernet on gen3 using 2.8 | 1 |
| 14:11, 26 May 2011 | NAMD benchmark img2 Efficiency cheaha dmc biowulf.png (file) |  |
18 KB | Tanthony@uab.edu | Page: NAMD_benchmarks, image 2, Efficiency of Cheaha, Biowulf, and DMC | 1 |
| 13:42, 26 May 2011 | NAMD benchmark img1 Days cheaha dmc biowulf.png (file) |  |
20 KB | Tanthony@uab.edu | Page: NAMD Benchmark Fig1. Days/ns Cheaha, Biowuld, and DMC | 1 |
| 14:20, 31 March 2011 | Screen1.png (file) |  |
320 KB | Tanthony@uab.edu | Reverted to version as of 18:19, 30 March 2011 | 3 |
| 18:47, 30 March 2011 | Screen10.png (file) |  |
82 KB | Tanthony@uab.edu | matlab activation | 1 |
| 18:47, 30 March 2011 | Screen9.png (file) |  |
104 KB | Tanthony@uab.edu | matlab install | 1 |
| 18:42, 30 March 2011 | Screen8.png (file) |  |
143 KB | Tanthony@uab.edu | install using the internet | 1 |
