Jupyter: Difference between revisions
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[http://jupyter.org/ Jupyter Notebook] is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. For more information on jupyter notebook, click [http://jupyter.org/documentation here]. | [http://jupyter.org/ Jupyter Notebook] is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. For more information on jupyter notebook, click [http://jupyter.org/documentation here]. | ||
== Jupyter on Cheaha == | |||
The cheaha cluster supports Jupyter notebooks for data analysis, but such jobs should be running using the SLURM job submission system to avoid overloading the head node. To run a Jupyter Notebook on cheaha, login to cheaha from your client machine and start an [https://docs.uabgrid.uab.edu/wiki/Slurm#Interactive_Job interactive job] | |||
<pre> | |||
srun --ntasks=1 --cpus-per-task=4 --mem-per-cpu=4096 --time=08:00:00 --partition=medium --job-name=JOB_NAME --pty /bin/bash | |||
module load Anaconda3/5.2.0 | |||
unset XDG_RUNTIME_DIR | |||
jupyter notebook --no-browser --ip=$host | |||
</pre> | |||
The server should start running and provide you with a URL. | |||
Now, start up a new tab/terminal/window on your client machine, and relogin to cheaha, using | |||
<pre> | |||
ssh -L 8888:c00XX:8888 BLAZERID@cheaha.rc.uab.edu | |||
</pre> | |||
where c00XX is the compute node where you started the jupiter notebook. | |||
Now access the link generated by jupyter notebook (change c00XX to localhost) on your client machine by opening your browser. It should be running. | |||
Revision as of 19:41, 21 August 2018
Jupyter Notebook is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. For more information on jupyter notebook, click here.
Jupyter on Cheaha
The cheaha cluster supports Jupyter notebooks for data analysis, but such jobs should be running using the SLURM job submission system to avoid overloading the head node. To run a Jupyter Notebook on cheaha, login to cheaha from your client machine and start an interactive job
srun --ntasks=1 --cpus-per-task=4 --mem-per-cpu=4096 --time=08:00:00 --partition=medium --job-name=JOB_NAME --pty /bin/bash module load Anaconda3/5.2.0 unset XDG_RUNTIME_DIR jupyter notebook --no-browser --ip=$host
The server should start running and provide you with a URL.
Now, start up a new tab/terminal/window on your client machine, and relogin to cheaha, using
ssh -L 8888:c00XX:8888 BLAZERID@cheaha.rc.uab.edu
where c00XX is the compute node where you started the jupiter notebook.
Now access the link generated by jupyter notebook (change c00XX to localhost) on your client machine by opening your browser. It should be running.