NgsCctsBuildAbyss: Difference between revisions
Jump to navigation
Jump to search
(Created page with " Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] Requires [sparsehash] TARGET_VER=sparsehash-2.0.2...") |
No edit summary |
||
| Line 2: | Line 2: | ||
Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] | Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source] | ||
Requires [sparsehash] | Requires [http://code.google.com/p/sparsehash sparsehash] | ||
TARGET_VER=sparsehash-2.0.2 | TARGET_VER=sparsehash-2.0.2 | ||
| Line 13: | Line 13: | ||
make install | make install | ||
Requires [boost] | Requires [http://sourceforge.net/projects/boost/ boost] | ||
wget http://downloads.sourceforge.net/project/boost/boost/1.49.0/boost_1_49_0.tar.bz2 | wget http://downloads.sourceforge.net/project/boost/boost/1.49.0/boost_1_49_0.tar.bz2 | ||
| Line 28: | Line 28: | ||
# CPPFLAGS is for sparsehash | # CPPFLAGS is for sparsehash | ||
./configure \ | ./configure \ | ||
--with-boost=/ | --with-boost=/share/apps/ngs-ccts/boost_1_49_0/boost \ | ||
--with-mpi=/usr/lib/openmpi \ | --with-mpi=/usr/lib/openmpi \ | ||
CPPFLAGS=-I/share/apps/ngs-ccts/${TARGET_VAR}/include \ | CPPFLAGS=-I/share/apps/ngs-ccts/${TARGET_VAR}/include \ | ||
--enable-maxk=100 | --enable-maxk=100 | ||
Revision as of 21:57, 9 October 2012
Based on [file:///share/apps/ngs-ccts/abyss-1.3.4/README.html#compilingabyssfromsource README.html:compiling from source]
Requires sparsehash
TARGET_VER=sparsehash-2.0.2 wget http://sparsehash.googlecode.com/files/${TARGET_VER}.tar.gz tar xzvf ${TARGET_VER}.tar.gz rm ${TARGET_VER}.tar.gz cd ${TARGET_VER} ./configure --prefix=/share/apps/ngs-ccts/${TARGET_VER} make make install
Requires boost
wget http://downloads.sourceforge.net/project/boost/boost/1.49.0/boost_1_49_0.tar.bz2 tar jxf boost_1_49_0.tar.bz2 ln -s boost_1_49_0/boost boost
ABySS itself
TARGET2_VER=abyss-1.3.4 wget http://www.bcgsc.ca/downloads/abyss/${TARGET2_VER}.tar.gz tar xzvf ${TARGET2_VER}.tar.gz rm ${TARGET2_VER}.tar.gz cd ${TARGET2_VER} # CPPFLAGS is for sparsehash ./configure \ --with-boost=/share/apps/ngs-ccts/boost_1_49_0/boost \ --with-mpi=/usr/lib/openmpi \ CPPFLAGS=-I/share/apps/ngs-ccts/${TARGET_VAR}/include \ --enable-maxk=100