TopHat: Difference between revisions
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TopHat is a collaborative effort between the [http://cbcb.umd.edu/ University of Maryland Center for Bioinformatics and Computational Biology] and the University of California, Berkeley [http://math.berkeley.edu/ Departments of Mathematics] and [http://www.mcb.berkeley.edu/ Molecular and Cell Biology]. | TopHat is a collaborative effort between the [http://cbcb.umd.edu/ University of Maryland Center for Bioinformatics and Computational Biology] and the University of California, Berkeley [http://math.berkeley.edu/ Departments of Mathematics] and [http://www.mcb.berkeley.edu/ Molecular and Cell Biology]. | ||
The latest stable release on [[Cheaha]] is 1.2.0 as part of the [http://main.g2.bx.psu.edu/ Galaxy] module. | |||
Revision as of 19:42, 2 August 2011
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
The latest stable release on Cheaha is 1.2.0 as part of the Galaxy module.