Talk:NAMD Benchmarks: Difference between revisions

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===Sample Benchmark comparing Days/ns for Cheaha, Biowulf, and DMC using InfiniBand===
===Sample Benchmark comparing Days/ns for Cheaha, Biowulf, and DMC using InfiniBand===
{| border="1" align="center" style="text-align:center;"
{| border="1" align="center" cellpadding="10" style="text-align:center;"
|+ Days/ns (efficiency) on Cheaha, Biowulf, and DMC
|+ Days/ns (efficiency) on Cheaha, Biowulf, and DMC
!Processors
!Processors
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[[File:NAMD_benchmark_img1_Days_cheaha_dmc_biowulf.png|center]]
[[File:NAMD_benchmark_img1_Days_cheaha_dmc_biowulf.png|center]]
 
[[File:NAMD_benchmark_img2_Efficiency_cheaha_dmc_biowulf.png|center]]


===Graph's===
===Graph's===

Revision as of 14:12, 26 May 2011

Benchmark introduction Calculation of efficiency Scaling to higher processor count- Calculation for scaling

Sample Benchmark using NAMD

Sample Benchmark comparing Days/ns for Cheaha, Biowulf, and DMC using InfiniBand

Days/ns (efficiency) on Cheaha, Biowulf, and DMC
Processors Cheaha Biowulf DMC
1 15.4054 (100%) 18.0535 (100%) 19.1000 (100%)
2 7.7119 (99.87%) 9.5163 (94.86%) 9.7600 (97.84%)
4 3.8933 (98.92%) 4.9222 (91.69%) 4.7570 (100.3%)*
8 1.9653 (97.98%) 2.5763 (87.59%) 2.5360 (94.14%)
16 0.9950 (96.76%) 1.2658 (89.14%) 1.3870 (86.06%)
32 0.5101 (94.37%) 0.6463 (87.29%) 0.7438 (80.24%)
64 0.2592 (92.83%) 0.3390 (83.22%) 0.3938 (75.78%)
128 0.1360 (88.45%) NA NA
256 0.0770 (78.09%) NA NA
NAMD benchmark img1 Days cheaha dmc biowulf.png
NAMD benchmark img2 Efficiency cheaha dmc biowulf.png

Graph's

Efficiency

Bench mark notes

Comparison of Ethernet and IB

Comparison on different nodes on Cheaha Gen 2 and Gen 3 with IB

Actual job benchmarks (Segrest job)

Perform Your Own Benchmarks