NgsCctsVcflib: Difference between revisions
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(Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (...") |
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= | = Overview = | ||
https://github.com/ekg/vcflib | https://github.com/ekg/vcflib | ||
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It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html | It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html | ||
= Version 20140224 = | |||
== To use == | |||
{{{ | {{{ | ||
module load ngs-ccts/vcflib/20140224 | module load ngs-ccts/vcflib/20140224 | ||
}}} | }}} | ||
== Build details == | |||
{{{ | {{{ | ||
mkdir -p /share/apps/ngs-ccts/vcflib/20140224 | mkdir -p /share/apps/ngs-ccts/vcflib/20140224 | ||
Revision as of 18:54, 24 February 2014
Overview
this project does not have release or tags.
It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html
Version 20140224
To use
{{{ module load ngs-ccts/vcflib/20140224 }}}
Build details
{{{ mkdir -p /share/apps/ngs-ccts/vcflib/20140224 git clone --recursive git://github.com/ekg/vcflib.git cd vcflib
- get latest gcc (older, default version failed to compile in fsom/ -see
module load gcc/4.8.1
make
- create module file
- it adds $VER_DIR/vcflib/bin to PATH
mkdir /share/apps/ngs-ccts/modulefiles/vcflib vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
}}}