NgsCcts: Difference between revisions
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== Short Read (denovo) Assemblers == | == Short Read (denovo) Assemblers == | ||
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ] | * [http://www.ebi.ac.uk/~zerbino/velvet velvet ] | ||
** velvet_1.2.08 (download src)([[NgsCctsBuildVelvet | ** velvet_1.2.08 (download src)([[NgsCctsBuildVelvet]]) | ||
Revision as of 21:15, 9 October 2012
This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
See also PublicDatasetsNgs for genomes, indices and databases
Microbiome
Alignment Visualization
Short Read Aligners
- bowtie
- bowtie-0.12.7 (linked from Galaxy)
- bowtie2
- bowtie2-2.0.0-beta7 (download binary)
- bwa
- bwa-0.6.2 (download src) NgsCctsBuildBwa build
Short Read (denovo) Assemblers
- velvet
- velvet_1.2.08 (download src)(NgsCctsBuildVelvet)