Brain Core: Difference between revisions
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CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original "Visual Brain Core" was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the "visual" from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now. | CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original "Visual Brain Core" was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the "visual" from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now. | ||
==CINL Brain Core Mission== | ==CINL Brain Core Mission== | ||
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===CINL Brain Core Personnel and Office Hours=== | ===CINL Brain Core Personnel and Office Hours=== | ||
**'''Office Hours: | |||
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.''' | |||
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. | *Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. | ||
**''' | ** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.''' | ||
*Mark Bolding, Ph.D. will discuss MR physics related questions. Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. | |||
* | |||
===CINL Brain Core Seminar Series and Neuroimaging Journal Club=== | ===CINL Brain Core Seminar Series and Neuroimaging Journal Club=== | ||
Brain Core seminar series includes high level speakers usually from outside UAB. Every | Brain Core seminar series includes high level speakers usually from outside UAB. Every second Friday at noon in CIRC 120. | ||
We will discuss new ideas and techniques in brain imaging. | We will discuss new ideas and techniques in brain imaging. During other fridays at noon in CIRC 120, we have Neuroimaging Journal Club. | ||
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. | |||
Information about this colloquium is here: [https://www.uab.edu/medicine/cinl/seminars CINL page ]. | |||
[[ | [[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series Older website for speakers]] | ||
===For Use in Grant Proposals:=== | ===For Use in Grant Proposals:=== | ||
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===Mailing List:=== | ===Mailing List:=== | ||
Please follow these instructions to subscribe to the ‘CINL-NOTICE’ listserv: | |||
Click here, or alternatively, send an email to listserv@listserv.uab.edu with the email body as sub cinl-notice. | |||
After which you’ll receive an email to confirm your email address. | |||
After confirming your email address, you would start receiving cancellation emails from others on the list as well as be able to send your own notifications . | |||
===[[BrainhackUAB]]=== | ===[[BrainhackUAB]]=== | ||
<!-- this link does not have much in it | |||
===[[Other information]]=== | ===[[Other information]]=== | ||
--> | |||
==Neuroimaging at UAB== | ==Neuroimaging at UAB== | ||
===UAB Neuroimaging Facilities=== | ===UAB Neuroimaging Facilities=== | ||
<!-- need to add good links to here --> | |||
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium | |||
[ | [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory ] | ||
[[UAB-HSF MEG Laboratory]] | [[UAB-HSF MEG Laboratory]] | ||
[[Small Animal Imaging Shared Facility]] | [[Small Animal Imaging Shared Facility]] | ||
<!-- the following is outdated and could be improved | |||
Equipment for collecting behavioral data during Neuroimaging | Equipment for collecting behavioral data during Neuroimaging | ||
*[http://www.sr-research.com/EL_1000.html Eye Tracker] | *[http://www.sr-research.com/EL_1000.html Eye Tracker] --> | ||
===Neuroimaging and Systems Neuroscience Labs at UAB=== | ===Neuroimaging and Systems Neuroscience Labs at UAB=== | ||
*[ | *[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL] | ||
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!) | (UAB folks, please let us know if your lab should be included on this list, or add more information about it!) | ||
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'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]''' | '''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]''' | ||
'''UAB & Auburn Neuroimaging | '''UAB & Auburn Neuroimaging Colloquium''' | ||
*Neuroimaging journal Club. | *Neuroimaging journal Club. Shared across campuses via GoToMeeting. | ||
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here] | |||
'''[[UAB & Auburn Neuroimaging Retreat]]''' | '''[[UAB & Auburn Neuroimaging Retreat]]''' | ||
==How To...== | ==How To...== | ||
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[[Psychtoolbox]] | [[Psychtoolbox]] | ||
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]] | [[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]] | ||
*[[Unix shortcuts]] | *[[Unix shortcuts]] | ||
===fMRI related how-to's and important links=== | ===fMRI related how-to's and important links=== | ||
[[Tools]] | [[Tools]] | ||
| Line 131: | Line 106: | ||
[[Cool Websites for Beginners]] | [[Cool Websites for Beginners]] | ||
===UAB Neuroimaging Tools and How-To's ( | ===UAB Neuroimaging Tools and How-To's (some require blazer id)=== | ||
[[Imaging Protocols]] | [[Imaging Protocols]] | ||
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[[Institutional Review Board]] | [[Institutional Review Board]] | ||
Latest revision as of 21:10, 13 March 2019
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original "Visual Brain Core" was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the "visual" from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.
CINL Brain Core Mission
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.
Information For CINL Brain Core
CINL Brain Core Personnel and Office Hours
- Office Hours:
- Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.
- Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues.
- Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.
- Mark Bolding, Ph.D. will discuss MR physics related questions. Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues.
CINL Brain Core Seminar Series and Neuroimaging Journal Club
Brain Core seminar series includes high level speakers usually from outside UAB. Every second Friday at noon in CIRC 120. We will discuss new ideas and techniques in brain imaging. During other fridays at noon in CIRC 120, we have Neuroimaging Journal Club. The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. Information about this colloquium is here: CINL page .
For Use in Grant Proposals:
The CINL Brain Core is supported by users. For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: Grant Proposal Language.
Mailing List:
Please follow these instructions to subscribe to the ‘CINL-NOTICE’ listserv:
Click here, or alternatively, send an email to listserv@listserv.uab.edu with the email body as sub cinl-notice. After which you’ll receive an email to confirm your email address.
After confirming your email address, you would start receiving cancellation emails from others on the list as well as be able to send your own notifications .
BrainhackUAB
Neuroimaging at UAB
UAB Neuroimaging Facilities
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium Civitan International Neuroimaging Laboratory
Small Animal Imaging Shared Facility
Neuroimaging and Systems Neuroscience Labs at UAB
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)
Here is a partial list of manuscripts that have resulted from CINL and Visual Brain Core resources.
Cluster Computing Environment at UAB: Cheaha
- Cheaha_GettingStarted - information on getting an account and learning about how to use the cluster
- Cheaha - background information on the cluster useful for grants and publications
UAB-Auburn University Collaboration for Neuroimaging
Auburn University MRI Research Center Siemens Magnetom 7T
UAB & Auburn Neuroimaging Colloquium
- Neuroimaging journal Club. Shared across campuses via GoToMeeting.
To get on our mailing list, click here
UAB & Auburn Neuroimaging Retreat
How To...