Bowtie: Difference between revisions
Jump to navigation
Jump to search
(added category software) |
(added category NGS) |
||
| (One intermediate revision by the same user not shown) | |||
| Line 11: | Line 11: | ||
</pre> | </pre> | ||
[[Category:Software]] | [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | ||
Latest revision as of 15:05, 4 April 2012
This page is a Generic stub.
You can help by expanding this page..
Bowtieis an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.
Project website: http://bowtie-bio.sourceforge.net/tutorial.shtml
Load SGE module
The following Modules files should be loaded for this package:
module load bowtie/bowtie-0.10