PHASE: Difference between revisions
Jump to navigation
Jump to search
(added links..) |
(added category bioinformatics) |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 11: | Line 11: | ||
The software also incorporates methods for estimating recombination rates, and identifying recombination hotspots: | The software also incorporates methods for estimating recombination rates, and identifying recombination hotspots: | ||
* Crawford et al (2004). Evidence for substantial fine-scale variation in recombination rates across the human genome. [http://stephenslab.uchicago.edu/MSpapers/Crawford2004.pdf Nature Genetics] | * Crawford et al (2004). Evidence for substantial fine-scale variation in recombination rates across the human genome. [http://stephenslab.uchicago.edu/MSpapers/Crawford2004.pdf Nature Genetics] | ||
Documentation on the usage of PHASE can be downloaded [http://stephenslab.uchicago.edu/instruct2.1.pdf here]. | Documentation on the usage of PHASE can be downloaded [http://stephenslab.uchicago.edu/instruct2.1.pdf here]. | ||
Project | '''Project website:''' http://depts.washington.edu/uwc4c/express-licenses/assets/phase/ | ||
====Load SGE module==== | |||
The following Modules files should be loaded for this package: | The following Modules files should be loaded for this package: | ||
<pre> | <pre> | ||
module load phase/phase | module load phase/phase | ||
</pre> | </pre> | ||
[[Category:Software]][[Category:Bioinformatics]] | |||
Latest revision as of 15:21, 4 April 2012
This page is a Generic stub.
You can help by expanding this page..
PHASE is software for haplotype reconstruction, and recombination rate estimation from population data. The software implements methods for estimating haplotypes from population genotype data described in:
- Stephens, M., and Donnelly, P. (2003). A comparison of Bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics, 73:1162-1169.
- Stephens, M., Smith, N., and Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68, 978--989.
- Stephens, M., and Scheet, P. (2005). Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation. American Journal of Human Genetics, 76:449-462.
The software also incorporates methods for estimating recombination rates, and identifying recombination hotspots:
- Crawford et al (2004). Evidence for substantial fine-scale variation in recombination rates across the human genome. Nature Genetics
Documentation on the usage of PHASE can be downloaded here.
Project website: http://depts.washington.edu/uwc4c/express-licenses/assets/phase/
Load SGE module
The following Modules files should be loaded for this package:
module load phase/phase