SHRiMP: Difference between revisions
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[http://compbio.cs.toronto.edu/shrimp/ SHRiMP]is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation. | [http://compbio.cs.toronto.edu/shrimp/ SHRiMP]is a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation. | ||
Project | '''Project website:''' http://compbio.cs.toronto.edu/shrimp/ | ||
====Load SGE module==== | |||
The following Modules files should be loaded for this package: | The following Modules files should be loaded for this package: | ||
<pre> | <pre> | ||
module load shrimp/shrimp-1.3 | module load shrimp/shrimp-1.3 | ||
</pre> | </pre> | ||
[[Category:Software]][[Category:Bioinformatics]] | |||
Latest revision as of 15:39, 4 April 2012
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SHRiMPis a software package for aligning genomic reads against a target genome. It was primarily developed with the multitudinous short reads of next generation sequencing machines in mind, as well as Applied Biosystem's colourspace genomic representation.
Project website: http://compbio.cs.toronto.edu/shrimp/
Load SGE module
The following Modules files should be loaded for this package:
module load shrimp/shrimp-1.3