VEGAS: Difference between revisions
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[http://gump.qimr.edu.au/VEGAS/ VEGAS] is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value. | [http://gump.qimr.edu.au/VEGAS/ VEGAS] is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value. | ||
'''Project website:''' http://gump.qimr.edu.au/VEGAS/ | |||
====Load SGE module==== | |||
The following Modules files should be loaded for this package: | The following Modules files should be loaded for this package: | ||
<pre> | <pre> | ||
module load VEGAS/VEGAS-0.8 | module load VEGAS/VEGAS-0.8 | ||
</pre> | </pre> | ||
[[Category:Software]] | |||
Latest revision as of 14:19, 4 April 2012
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VEGAS is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.
Project website: http://gump.qimr.edu.au/VEGAS/
Load SGE module
The following Modules files should be loaded for this package:
module load VEGAS/VEGAS-0.8