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JAGS (Just Another Gibbs Sampler) is a Bayesian hierarchical model analysis program using Markov Chain Monte Carlo (MCMC) simulation. It is similar to [http://mathstat.helsinki.fi/openbugs BUGS] but will compile on Linux systems.
[[wikipedia:Just_another_Gibbs_sampler|  Just another Gibbs sampler (JAGS)]] is a program for analysis of Bayesian hierarchical models using Markov chain Monte Carlo (MCMC) developed by Martyn Plummer. Its modeling abilities are similar to WinBUGS/OpenBUGS through the use of a dialect of the same modeling language (informally, BUGS), but it provides no GUI for model building and MCMC samples postprocessing, which must therefore be treated in a separate program (for example calling JAGS from R through a library such as rjags and post-processing MCMC output in R).


Click [http://streaming.stat.iastate.edu/wiki/index.php/JAGS_Guide here] for a good description of JAGS and how it differs from BUGS.
Click [http://streaming.stat.iastate.edu/wiki/index.php/JAGS_Guide here] for a good description of JAGS and how it differs from BUGS.


'''Project website:''' http://mcmc-jags.sourceforge.net/
====Load SGE module====
The JAGS environment module can be loaded as follows
The JAGS environment module can be loaded as follows
<pre>
<pre>
module load jags/jags-1.0-gnu
module load jags/jags-1.0-gnu
</pre>
</pre>
[[Category:Software]][[Category:Bio-statistics]]

Latest revision as of 15:15, 4 April 2012

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Just another Gibbs sampler (JAGS) is a program for analysis of Bayesian hierarchical models using Markov chain Monte Carlo (MCMC) developed by Martyn Plummer. Its modeling abilities are similar to WinBUGS/OpenBUGS through the use of a dialect of the same modeling language (informally, BUGS), but it provides no GUI for model building and MCMC samples postprocessing, which must therefore be treated in a separate program (for example calling JAGS from R through a library such as rjags and post-processing MCMC output in R).

Click here for a good description of JAGS and how it differs from BUGS.

Project website: http://mcmc-jags.sourceforge.net/

Load SGE module

The JAGS environment module can be loaded as follows

module load jags/jags-1.0-gnu