Research data repositories: Difference between revisions
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{{ResearchNotebook}} | |||
==working groups== | |||
[http://www.nidag.org/ NIDAG] NIDAG is an international working group dedicated to enhancing access to neuroimaging data in order to advance progress in neuroscience. | |||
==visualization== | ==visualization== | ||
[https://wikis.uit.tufts.edu/confluence/display/VUEUserGuide/VUE+USER+GUIDE VUE] | [https://wikis.uit.tufts.edu/confluence/display/VUEUserGuide/VUE+USER+GUIDE VUE] | ||
==papers and presentations== | ==papers and presentations== | ||
* Derrfuss, J. & Mar, R. A. (2009). Lost in localization: The need for a universal coordinate database. NeuroImage, 48, 1–7. | |||
(PDF includes 4 commentaries by Hamilton, Nielsen, Van Essen, Laird, Lancaster, and Fox.) [http://www.yorku.ca/mar/derrfuss_mar_2009_ni_lost_in_localization_with_responses.pdf] | |||
* | * Using the Institutional Repository to publish research data, C Gutteridge [http://eprints.ecs.soton.ac.uk/20885/] | ||
* Technical and organizational considerations for the long-term maintenance and development of the digital brain atlases and web-based databases, Kei Ito [http://frontiersin.org/neuroscience/systemsneuroscience/paper/10.3389/fnsys.2010.00026/] | |||
* Institutional Repositories and Research Data Curation in a Distributed Environment, Michael Witt [http://docs.lib.purdue.edu/lib_research/104] | |||
* Constructing Data Curation Profiles, Michael Witt, Jacob R. Carlson, Melissa Cragin, and D. Scott Brandt [http://docs.lib.purdue.edu/lib_research/114] | |||
* Introduction to Institutional Data Repositories Workshop, Michael Witt and Melissa Cragin [http://docs.lib.purdue.edu/lib_research/83] | |||
* Strategies for institutional repository development: A case study of three evolving initiatives, Carole L. Palmer, Lauren C. Teffeau, and Mark P. Newton [http://docs.lib.purdue.edu/lib_research/106] | |||
* An Internet Discussion about Scientific and Scholarly Journals and Their Future Edited by Ann Shumelda Okerson, Association of Research Libraries and James J. O'Donnell, University of Pennsylvania [http://www.arl.org/sc/subversive/] | |||
== | ==lists of repositories== | ||
* [http://oad.simmons.edu/oadwiki/Data_repositories OAD list of data repositories] | * [http://oad.simmons.edu/oadwiki/Data_repositories OAD list of data repositories] | ||
* [http://oad.simmons.edu/oadwiki/Disciplinary_repositories OAD list of document repositories] | * [http://oad.simmons.edu/oadwiki/Disciplinary_repositories OAD list of document repositories] | ||
Why aren't there any sites on both lists? | Why aren't there any sites on both lists? | ||
==example neuroimaging databases== | |||
;[http://www.xnat.org/ xnat] : software to build your own neuroimaging database and manage study workflow | |||
;[http://sumsdb.wustl.edu:8081/sums/index.jsp SumsDB] : SumsDB is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories. | |||
;[http://www.nitrc.org/projects/fcon_1000/ 1000 Functional Connectomes Project] : Goal: To usher in a new era of discovery science for human brain function through active data-sharing by the neuroimaging community. | |||
;[http://www.nitrc.org/projects/multimodal/ nitrc multimodal] : This is intended to be a resource for statisticians and imaging scientists to be able to quantify the reproducibility of their imaging methods using data available from a generic "1 hour" session at 3T. | |||
;[http://www.openfmri.org/ OpenfMRI] : OpenfMRI.org is a project dedicated to the free and open sharing of functional magnetic resonance imaging (fMRI) datasets, including raw data. | |||
;[http://www.fmridc.org/f/fmridc fmridc] : A public repository of peer reviewed fMRI studies and their underlying data | |||
;[http://www.oasis-brains.org/ oasis] : The Open Access Series of Imaging Studies (OASIS) is a project aimed at making MRI data sets of the brain freely available to the scientific community. | |||
==example data license== | |||
;[http://www.nitrc.org/include/glossary.php#583 BIRN data license] | |||
Latest revision as of 14:08, 1 November 2010
working groups
NIDAG NIDAG is an international working group dedicated to enhancing access to neuroimaging data in order to advance progress in neuroscience.
visualization
papers and presentations
- Derrfuss, J. & Mar, R. A. (2009). Lost in localization: The need for a universal coordinate database. NeuroImage, 48, 1–7.
(PDF includes 4 commentaries by Hamilton, Nielsen, Van Essen, Laird, Lancaster, and Fox.) [1]
- Using the Institutional Repository to publish research data, C Gutteridge [2]
- Technical and organizational considerations for the long-term maintenance and development of the digital brain atlases and web-based databases, Kei Ito [3]
- Institutional Repositories and Research Data Curation in a Distributed Environment, Michael Witt [4]
- Constructing Data Curation Profiles, Michael Witt, Jacob R. Carlson, Melissa Cragin, and D. Scott Brandt [5]
- Introduction to Institutional Data Repositories Workshop, Michael Witt and Melissa Cragin [6]
- Strategies for institutional repository development: A case study of three evolving initiatives, Carole L. Palmer, Lauren C. Teffeau, and Mark P. Newton [7]
- An Internet Discussion about Scientific and Scholarly Journals and Their Future Edited by Ann Shumelda Okerson, Association of Research Libraries and James J. O'Donnell, University of Pennsylvania [8]
lists of repositories
Why aren't there any sites on both lists?
example neuroimaging databases
- xnat
- software to build your own neuroimaging database and manage study workflow
- SumsDB
- SumsDB is a repository of brain-mapping data (surfaces & volumes; structural & functional data) from many laboratories.
- 1000 Functional Connectomes Project
- Goal: To usher in a new era of discovery science for human brain function through active data-sharing by the neuroimaging community.
- nitrc multimodal
- This is intended to be a resource for statisticians and imaging scientists to be able to quantify the reproducibility of their imaging methods using data available from a generic "1 hour" session at 3T.
- OpenfMRI
- OpenfMRI.org is a project dedicated to the free and open sharing of functional magnetic resonance imaging (fMRI) datasets, including raw data.
- fmridc
- A public repository of peer reviewed fMRI studies and their underlying data
- oasis
- The Open Access Series of Imaging Studies (OASIS) is a project aimed at making MRI data sets of the brain freely available to the scientific community.