FSL: Difference between revisions
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[http://www.fmrib.ox.ac.uk/fsl/index.html FSL] is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. | [http://www.fmrib.ox.ac.uk/fsl/index.html FSL] is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. | ||
The [http://www.fmrib.ox.ac.uk/fsldownloads/ latest version of FSL available is 4.1.6]. The last update to this software was in 2008. | |||
== FSL on Cheaha == | == FSL on Cheaha == | ||
[http://www.fmrib.ox.ac.uk/fsl/fsl/linux.html FSL-4.1.6] is installed | [http://www.fmrib.ox.ac.uk/fsl/fsl/linux.html FSL-4.1.6] is installed on Cheaha. ''module'' command can be used to find out the current installed version. For FSL, use | ||
<pre> | |||
module whatis fsl | |||
</pre> | |||
== Environment Setup == | |||
Before running any FSL applications like ''bedpostx'', set up the necessary environment with the following command: | |||
<pre> | <pre> | ||
module load fsl/fsl-4.1.6 | module load fsl/fsl-4.1.6 | ||
</pre> | </pre> | ||
[[Category:Software]][[Category:Image Processing]] | |||
Latest revision as of 15:10, 4 April 2012
Overview
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK.
The latest version of FSL available is 4.1.6. The last update to this software was in 2008.
FSL on Cheaha
FSL-4.1.6 is installed on Cheaha. module command can be used to find out the current installed version. For FSL, use
module whatis fsl
Environment Setup
Before running any FSL applications like bedpostx, set up the necessary environment with the following command:
module load fsl/fsl-4.1.6