NgsCctsVcflib: Difference between revisions
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(Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (...") |
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= | = Overview = | ||
https://github.com/ekg/vcflib | https://github.com/ekg/vcflib | ||
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It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html | It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html | ||
= Version 20140224 = | |||
== To use == | |||
<nowiki>module load ngs-ccts/vcflib/20140224</nowiki> | |||
module load ngs-ccts/vcflib/20140224 | |||
== Build details == | |||
<nowiki># setup | |||
mkdir -p /share/apps/ngs-ccts/vcflib/20140224 | mkdir -p /share/apps/ngs-ccts/vcflib/20140224 | ||
# get latest code | |||
git clone --recursive git://github.com/ekg/vcflib.git | git clone --recursive git://github.com/ekg/vcflib.git | ||
# build | |||
# get latest gcc (older, default version failed to compile in fsom/ -see | # get latest gcc (older, default version failed to compile in fsom/ -see | ||
module load gcc/4.8.1 | module load gcc/4.8.1 | ||
cd vcflib | |||
make | make | ||
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mkdir /share/apps/ngs-ccts/modulefiles/vcflib | mkdir /share/apps/ngs-ccts/modulefiles/vcflib | ||
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024 | vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024 | ||
</nowiki> | |||
Latest revision as of 18:56, 24 February 2014
Overview
this project does not have release or tags.
It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html
Version 20140224
To use
module load ngs-ccts/vcflib/20140224
Build details
# setup mkdir -p /share/apps/ngs-ccts/vcflib/20140224 # get latest code git clone --recursive git://github.com/ekg/vcflib.git # build # get latest gcc (older, default version failed to compile in fsom/ -see module load gcc/4.8.1 cd vcflib make # create module file # it adds $VER_DIR/vcflib/bin to PATH mkdir /share/apps/ngs-ccts/modulefiles/vcflib vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024