NgsCctsBuildVicuna: Difference between revisions
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cd .. | cd .. | ||
unzip downloads/vicuna.v1.2.zip -x '__MACOSX/*' | unzip downloads/vicuna.v1.2.zip -x '__MACOSX/*' | ||
configure & build | configure & build - NOT NEEDED (see below) | ||
cd /share/apps/ngs-ccts/VICUNA_v1.2/src | cd /share/apps/ngs-ccts/VICUNA_v1.2/src | ||
# patch in NCBI C++ library path | # patch in NCBI C++ library path | ||
sed -i -c -e 's|MYPATH=.*|MYPATH=/share/apps/ngs-ccts/ncbi_cxx--7_0_0|' | sed -i.orig -c -e 's|MYPATH=.*|MYPATH=/share/apps/ngs-ccts/ncbi_cxx--7_0_0|' Makefile | ||
# set NCBI C++ into LIB path | |||
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/share/apps/ngs-ccts/ncbi_cxx--7_0_0/lib | |||
# !! Waiting for NCBI to finish building | # !! Waiting for NCBI to finish building | ||
make | make | ||
== Note: pre-built exe for Linux 64bit! == | |||
in the "executable" subdirectory! | |||
see [https://groups.google.com/forum/?hl=en&fromgroups=#!topic/viral-tool-users/kV8E3ll8TzM] | |||
Revision as of 08:17, 9 January 2013
Build/Install Broad's Vicuna
pre-requisites
NCBI toolkit 7.0.0
# download cd /share/apps/ngs-ccts/downloads wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/ARCHIVE/7_0_0/ncbi_cxx--7_0_0.tar.gz # uncompress cd .. tar xzvf ../downloads/ncbi_cxx--7_0_0.tar.gz cd ncbi_cxx--7_0_0 # bulid ./configure --prefix=/share/apps/ngs-ccts/ncbi_cxx--7_0_0 --with-optimization --with-mt --with-dll make make install
Vicuna
download
# download - by hand - requires registration cd /share/apps/ngs-ccts/downloads firefox http://www.broadinstitute.org/scientific-community/science/projects/viral-genomics/vicuna mv vicuna.zip vicuna.v1.2.zip # uncompress cd .. unzip downloads/vicuna.v1.2.zip -x '__MACOSX/*'
configure & build - NOT NEEDED (see below)
cd /share/apps/ngs-ccts/VICUNA_v1.2/src # patch in NCBI C++ library path sed -i.orig -c -e 's|MYPATH=.*|MYPATH=/share/apps/ngs-ccts/ncbi_cxx--7_0_0|' Makefile # set NCBI C++ into LIB path export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/share/apps/ngs-ccts/ncbi_cxx--7_0_0/lib # !! Waiting for NCBI to finish building make
Note: pre-built exe for Linux 64bit!
in the "executable" subdirectory! see [1]