NgsCcts: Difference between revisions
Jump to navigation
Jump to search
| Line 28: | Line 28: | ||
* [http://www.ebi.ac.uk/~zerbino/velvet velvet ] | * [http://www.ebi.ac.uk/~zerbino/velvet velvet ] | ||
** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]]) | ** velvet_1.2.08 ([http://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.08.tgz download src])([[NgsCctsBuildVelvet]]) | ||
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] | *** MAXKMERLENGTH = 57 | ||
*** LONGSEQUENCES | |||
* [http://www.bcgsc.ca/platform/bioinfo/software/abyss ABySS] '''NOT DONE''' | |||
** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]]) | ** abyss_1.3.4 ([http://www.bcgsc.ca/downloads/abyss/abyss-1.3.4.tar.gz download src])([[NgsCctsBuildAbyss]]) | ||
*** maxk=100 | |||
Revision as of 22:07, 9 October 2012
This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
See also PublicDatasetsNgs for genomes, indices and databases
Microbiome
Alignment Visualization
Short Read Aligners
- bowtie
- bowtie-0.12.7 (linked from Galaxy)
- bowtie2
- bowtie2-2.0.0-beta7 (download binary)
- bwa
- bwa-0.6.2 (download src) [NgsCctsBuildBwa]
Short Read (denovo) Assemblers
- velvet
- velvet_1.2.08 (download src)(NgsCctsBuildVelvet)
- MAXKMERLENGTH = 57
- LONGSEQUENCES
- velvet_1.2.08 (download src)(NgsCctsBuildVelvet)
- ABySS NOT DONE
- abyss_1.3.4 (download src)(NgsCctsBuildAbyss)
- maxk=100
- abyss_1.3.4 (download src)(NgsCctsBuildAbyss)