NgsCcts: Difference between revisions
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== Alignment Visualization == | == Alignment Visualization == | ||
* [http://www.broadinstitute.org/software/igv/download IGV] [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip 2.1.23] | * [http://www.broadinstitute.org/software/igv/download IGV] | ||
* [http://www.broadinstitute.org/software/igv/download igvtools] [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip 2.1.7] | ** [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip IGV 2.1.23] | ||
* [http://www.broadinstitute.org/software/igv/download igvtools] | |||
** [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip IGVtools 2.1.7] | |||
== Short Read Aligners == | == Short Read Aligners == | ||
Revision as of 20:34, 9 October 2012
This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
See also PublicDatasetsNgs for genomes, indices and databases
Microbiome
Alignment Visualization
Short Read Aligners
- bowtie
- bowtie-0.12.7 (linked from Galaxy)
- bowtie2
- bowtie2-2.0.0-beta7 bin download