Revision as of 20:33, 9 October 2012

Shared CCTS NGS apps

This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts

Links to latest versions of each package are in /share/apps/ngs-ccts/latest.

See also PublicDatasetsNgs for genomes, indices and databases

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 This page documents apps installed by the CCTS BMI group in cheaha:/share/apps/ngs-ccts
+Links to latest versions of each package are in /share/apps/ngs-ccts/latest.
 See also [[PublicDatasetsNgs]] for genomes, indices and databases
@@ Line 11: / Line 13: @@
 * [http://www.broadinstitute.org/software/igv/download IGV] [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip 2.1.23]
 * [http://www.broadinstitute.org/software/igv/download igvtools] [http://www.broadinstitute.org/igv/projects/downloads/igvtools_2.1.7.zip 2.1.7]
+== Short Read Aligners ==
+* [http://bowtie-bio.sourceforge.net bowtie]
+** bowtie-0.12.7 (linked from Galaxy)
+* [http://bowtie-bio.sourceforge.net/bowtie2 bowtie2]
+** bowtie2-2.0.0-beta7 [http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.0.0-beta7/bowtie2-2.0.0-beta7-linux-x86_64.zip?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fbowtie-bio%2Ffiles%2Fbowtie2%2F2.0.0-beta7%2F&ts=1349813862&use_mirror=superb-dca3 bin download]
+== Short Read (denovo) Assemblers ==