IgvFromComputeNode: Difference between revisions
Jump to navigation
Jump to search
(Created page with "= Remote display from compute node = Example program: IGV # Install & Launch X-Win on your desktop machine * Windows: X-Win32 from [http://www.uab.edu/it/software UAB IT]] ...") |
|||
| Line 10: | Line 10: | ||
# check that "xterm" works | # check that "xterm" works | ||
* allocate compute node with qlogin, with appropriate time/memory | * allocate compute node with qlogin, with appropriate time/memory | ||
** '''WARNING''': if you run IGV on the cluster head-node, you will bring on the wrath of the cluster admins!! | |||
# 4 hours, 6G RAM | # 4 hours, 6G RAM | ||
qlogin -l h_rt=0:04:00,vf=6G | qlogin -l h_rt=0:04:00,vf=6G | ||
| Line 15: | Line 16: | ||
# check that "xterm" works | # check that "xterm" works | ||
* launch IGV | * launch IGV | ||
# '''WARNING''': run only on compute nodes, NEVER on head-node | |||
/share/apps/ngs-ccts/IGV/igv.sh | /share/apps/ngs-ccts/IGV/igv.sh | ||
# or | # or | ||
/share/apps/ngs-ccts/IGV/igv6g # doesn't seem to give 6G ram... | /share/apps/ngs-ccts/IGV/igv6g # doesn't seem to give 6G ram... | ||
Revision as of 04:23, 12 September 2012
Remote display from compute node
Example program: IGV
- Install & Launch X-Win on your desktop machine
- Windows: X-Win32 from UAB IT]
- connect to cheaha head node with X-forwarding:
ssh -X cheaha.uabgrid.uab.edu # check that "echo $DISPLAY" shows you something # check that "xterm" works
- allocate compute node with qlogin, with appropriate time/memory
- WARNING: if you run IGV on the cluster head-node, you will bring on the wrath of the cluster admins!!
# 4 hours, 6G RAM qlogin -l h_rt=0:04:00,vf=6G # check that "echo $DISPLAY" shows you something # check that "xterm" works
- launch IGV
# WARNING: run only on compute nodes, NEVER on head-node /share/apps/ngs-ccts/IGV/igv.sh # or /share/apps/ngs-ccts/IGV/igv6g # doesn't seem to give 6G ram...