2011 HPC Boot Camp: Difference between revisions
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9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys | 9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys | ||
* 9:05 - 9: | * 9:05 - 9:20 Logging in and uploading data to Galaxy | ||
* 9: | * 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS | ||
* 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS | |||
* 10:30 - 11:00 Galaxy Workflows & Advanced Topics | * 10:30 - 11:00 Galaxy Workflows & Advanced Topics | ||
Revision as of 16:47, 8 September 2011
The UAB HPC Bootcamp is being held in conjunction with the UAB Research Computing Day 2011. The HPC Bootcamp will take place on Friday September 16 at the Hill University Center Auditorium from 9:00am to 3:30pm.
Registration
Registration is requested by Wednesday September 14th to attend this event. Please register here
Agenda
9:00-9:05 Opening Remarks - John-Paul Robinson, UAB IT Research Computing
9:05 - 11:00 Galaxy Introduction - Next Generation Sequencing Analys
- 9:05 - 9:20 Logging in and uploading data to Galaxy
- 9:20 - 9:50 NGS genome sequencing analysis, John Osborne, CCTS
- 9:50 - 10:30 NGS transcripome sequencing analysis (RNAseq), Curtis Hendrickson, CCTS
- 10:30 - 11:00 Galaxy Workflows & Advanced Topics
11:00-1:00 Lunch on your own
1:00-2:00 - Research Computing Resources Session
- 1:00 - 1:20 Overview of Research Computing Rources -- Cluster on demand
- 1:20 - 1:40 Hadoop overview
- 1:40 - 2:00 Using Git for Development -- Shantanu Pavgi, UAB IT Research Computing
2:00-2:10 - break
2:10-3:20 - Developing Research Computing Solutions Session
- 2:10 - 2:30 - Scientific Python Programming and Application Performance -- Robert Cloud, SoE
- 2:30 - 2:50 - Example Research workflow
- 2:50 - 3:10 - RESTful Web Programming
- 3:10 - 3:30 - How-to Use MatLab DCS -- Thomas Anthony, ITRC - SoE