TopHat: Difference between revisions
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The latest stable release on [[Cheaha]] is 1.2.0 as part of the [http://main.g2.bx.psu.edu/ Galaxy] module. | The latest stable release on [[Cheaha]] is 1.2.0 as part of the [http://main.g2.bx.psu.edu/ Galaxy] module. TopHat can run through the [http://galaxy.uabgrid.uab.edu/ UAB Galaxy] interface or directly on the cluster by submitting jobs to SGE. | ||
Revision as of 19:49, 2 August 2011
TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.
TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
The latest stable release on Cheaha is 1.2.0 as part of the Galaxy module. TopHat can run through the UAB Galaxy interface or directly on the cluster by submitting jobs to SGE.