UAB CIDay 2008 - Revision history

Jpr@uab.edu: /* Agenda */ Added links to presentations and available posters. Added R poster.

2008-09-02T17:41:08Z

Agenda: Added links to presentations and available posters. Added R poster.

Dls@uab.edu: /* Agenda */

2008-08-22T15:10:01Z

Agenda

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 '''Noon – 1:30	'''	'''Poster Session of Selected UAB Cyberinfrastructure Users''', Cudworth Hall 140
-* '''Viral Bioinformatics Resource Facility''', Elliot J Lefkowitz, Associate Professor, Microbiology
+* '''Viral Bioinformatics Resource Facility''', Elliott Lefkowitz (Dept of Microbiology, UAB)
 == Bio-Sketches of Speakers ==

Dls@uab.edu at 17:10, 8 August 2008

2008-08-08T17:10:04Z

← Older revision		Revision as of 17:10, 8 August 2008
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	= Second Annual =		= Second Annual UAB Cyberinfrastructure (CI) Day =
	= UAB Cyberinfrastructure (CI) Day =
	August 21, 2008		August 21, 2008
	Cudworth Hall Auditorium		Cudworth Hall Auditorium

Dls@uab.edu: /* Agenda */

2008-08-08T17:09:27Z

Agenda

← Older revision		Revision as of 17:09, 8 August 2008
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	'''8:00 - 9:00''' Registration & Refreshments		'''8:00 - 9:00''' Registration & Refreshments


	'''Session 1''' David L Shealy, Session chair		'''Session 1''' David L Shealy, Session chair

Dls@uab.edu: /* Agenda */

2008-08-08T17:09:09Z

Agenda

← Older revision		Revision as of 17:09, 8 August 2008
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	'''10:00 – 10:20''' Coffee Break		'''10:00 – 10:20''' Coffee Break


	'''Session 2''' David L Shealy, Session chair		'''Session 2''' David L Shealy, Session chair

Dls@uab.edu: /* Agenda */

2008-08-08T17:08:52Z

Agenda

← Older revision		Revision as of 17:08, 8 August 2008
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	'''8:00 - 9:00''' Registration & Refreshments		'''8:00 - 9:00''' Registration & Refreshments

	~~===~~ '''Session 1''' ~~===~~ David L Shealy, Session chair		'''Session 1''' David L Shealy, Session chair

	'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB		'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB

Dls@uab.edu: /* '''Session 1''' David L Shealy, Session chair */

2008-08-08T17:08:26Z

'''Session 1''' David L Shealy, Session chair

← Older revision		Revision as of 17:08, 8 August 2008
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	'''8:00 - 9:00''' Registration & Refreshments		'''8:00 - 9:00''' Registration & Refreshments

	=== '''Session 1''' David L Shealy, Session chair ~~===~~		=== '''Session 1''' === David L Shealy, Session chair

	'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB		'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB

Dls@uab.edu: /* Agenda */

2008-08-08T17:07:56Z

Agenda

← Older revision		Revision as of 17:07, 8 August 2008
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	'''8:00 - 9:00''' Registration & Refreshments		'''8:00 - 9:00''' Registration & Refreshments

	'''Session 1''' David L Shealy, Session chair		=== '''Session 1''' David L Shealy, Session chair ===

	'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB		'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB

Dls@uab.edu: /* Bio-Sketch of Speakers */

2008-08-08T17:06:58Z

Bio-Sketch of Speakers

← Older revision		Revision as of 17:06, 8 August 2008
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	* '''Viral Bioinformatics Resource Facility''', Elliot J Lefkowitz, Associate Professor, Microbiology		* '''Viral Bioinformatics Resource Facility''', Elliot J Lefkowitz, Associate Professor, Microbiology

	== Bio-~~Sketch~~ of Speakers ==		== Bio-Sketches of Speakers ==
	'''R. Mark Adams, Ph.D.'''		'''R. Mark Adams, Ph.D.'''
	Dr. Mark Adams has been in the field of bioinformatics for more than 15 years with extensive experience in the design and implementation of large-scale informatics systems, including regulated systems for use in clinical trials and the management of high-throughput laboratory processes. His theoretical work has encompassed abstract mathematical and computational analysis of molecular genetic and protein structure. Additionally, his scientific work has resulted in many patent applications, with several patents granted. As a biotechnology executive Dr. Adams has extensive experience in the strategic leadership and management of scientific and technical teams, having managed teams of up to 50 biologists and computer scientists designing and implementing high-throughput molecular biology and bioinformatics systems. In his role as vice-president of a public biotechnology company, Dr. Adams served on the executive committee, chartered with creating and executing a strategic plan for cancer pharmacogenomics. Dr. Adams has experience in the development and management of large government contracts and federal health research activities, with an emphasis on developing community focused collaborative research and informatics programs. He is currently the Booz Allen Program Manager of the National Cancer Institute cancer Biomedical Informatics Grid (caBIG) project. Dr. Adams is an active member of the field of bioinformatics where he speaks and publishes frequently. He is currently an editor of the Journal of Applied Analytics in Consulting, and a past editor of Briefings in Bioinformatics.		Dr. Mark Adams has been in the field of bioinformatics for more than 15 years with extensive experience in the design and implementation of large-scale informatics systems, including regulated systems for use in clinical trials and the management of high-throughput laboratory processes. His theoretical work has encompassed abstract mathematical and computational analysis of molecular genetic and protein structure. Additionally, his scientific work has resulted in many patent applications, with several patents granted. As a biotechnology executive Dr. Adams has extensive experience in the strategic leadership and management of scientific and technical teams, having managed teams of up to 50 biologists and computer scientists designing and implementing high-throughput molecular biology and bioinformatics systems. In his role as vice-president of a public biotechnology company, Dr. Adams served on the executive committee, chartered with creating and executing a strategic plan for cancer pharmacogenomics. Dr. Adams has experience in the development and management of large government contracts and federal health research activities, with an emphasis on developing community focused collaborative research and informatics programs. He is currently the Booz Allen Program Manager of the National Cancer Institute cancer Biomedical Informatics Grid (caBIG) project. Dr. Adams is an active member of the field of bioinformatics where he speaks and publishes frequently. He is currently an editor of the Journal of Applied Analytics in Consulting, and a past editor of Briefings in Bioinformatics.

Dls@uab.edu: /* Agenda */

2008-08-08T17:06:22Z

Agenda

← Older revision		Revision as of 17:06, 8 August 2008
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	* '''Viral Bioinformatics Resource Facility''', Elliot J Lefkowitz, Associate Professor, Microbiology		* '''Viral Bioinformatics Resource Facility''', Elliot J Lefkowitz, Associate Professor, Microbiology

			== Bio-Sketch of Speakers ==
	'''R. Mark Adams, Ph.D.'''		'''R. Mark Adams, Ph.D.'''
	Dr. Mark Adams has been in the field of bioinformatics for more than 15 years with extensive experience in the design and implementation of large-scale informatics systems, including regulated systems for use in clinical trials and the management of high-throughput laboratory processes. His theoretical work has encompassed abstract mathematical and computational analysis of molecular genetic and protein structure. Additionally, his scientific work has resulted in many patent applications, with several patents granted. As a biotechnology executive Dr. Adams has extensive experience in the strategic leadership and management of scientific and technical teams, having managed teams of up to 50 biologists and computer scientists designing and implementing high-throughput molecular biology and bioinformatics systems. In his role as vice-president of a public biotechnology company, Dr. Adams served on the executive committee, chartered with creating and executing a strategic plan for cancer pharmacogenomics. Dr. Adams has experience in the development and management of large government contracts and federal health research activities, with an emphasis on developing community focused collaborative research and informatics programs. He is currently the Booz Allen Program Manager of the National Cancer Institute cancer Biomedical Informatics Grid (caBIG) project. Dr. Adams is an active member of the field of bioinformatics where he speaks and publishes frequently. He is currently an editor of the Journal of Applied Analytics in Consulting, and a past editor of Briefings in Bioinformatics.		Dr. Mark Adams has been in the field of bioinformatics for more than 15 years with extensive experience in the design and implementation of large-scale informatics systems, including regulated systems for use in clinical trials and the management of high-throughput laboratory processes. His theoretical work has encompassed abstract mathematical and computational analysis of molecular genetic and protein structure. Additionally, his scientific work has resulted in many patent applications, with several patents granted. As a biotechnology executive Dr. Adams has extensive experience in the strategic leadership and management of scientific and technical teams, having managed teams of up to 50 biologists and computer scientists designing and implementing high-throughput molecular biology and bioinformatics systems. In his role as vice-president of a public biotechnology company, Dr. Adams served on the executive committee, chartered with creating and executing a strategic plan for cancer pharmacogenomics. Dr. Adams has experience in the development and management of large government contracts and federal health research activities, with an emphasis on developing community focused collaborative research and informatics programs. He is currently the Booz Allen Program Manager of the National Cancer Institute cancer Biomedical Informatics Grid (caBIG) project. Dr. Adams is an active member of the field of bioinformatics where he speaks and publishes frequently. He is currently an editor of the Journal of Applied Analytics in Consulting, and a past editor of Briefings in Bioinformatics.

← Older revision		Revision as of 17:41, 2 September 2008
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	'''Session 1''' David L Shealy, Session chair		'''Session 1''' David L Shealy, Session chair

	'''9:00 – 9:05''' ''Welcome'',Sheila Sanders, Vice President for Information Technology, UAB		'''9:00 – 9:05''' ''Welcome'', Sheila Sanders, Vice President for Information Technology, UAB

	'''9:05 – 10:00 ''' caBIG, an Open Platform for Interoperable Biomedical Informatics		'''9:05 – 10:00 ''' ''caBIG, an Open Platform for Interoperable Biomedical Informatics''
	Mark Adams, caBIG		Mark Adams, caBIG ([http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/UAB_caBIG_Intro_RMA_08182008b.ppt ppt], [http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/UAB_caBIG_Intro_RMA_08182008b.pdf pdf])

	'''10:00 – 10:20''' Coffee Break		'''10:00 – 10:20''' Coffee Break
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	'''Session 2''' David L Shealy, Session chair		'''Session 2''' David L Shealy, Session chair

	'''10:20 – 10:50''' ''Supporting Transformative Research through		'''10:20 – 10:50''' ''Supporting Transformative Research through Regional Cyberinfrastructure (CI)'', Gary Crane, SURA ([http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/Gary%20Crane%20SG-CI-Day-UAB.ppt ppt], [http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/Gary%20Crane%20SG-CI-Day-UAB.pdf pdf])
	Regional Cyberinfrastructure (CI)'', Gary Crane, SURA

	'''10:50 – 11:20''' ''HPC and Network Offerings from the Alabama Supercomputer Authority'', David Young, CSC		'''10:50 – 11:20''' ''HPC and Network Offerings from the Alabama Supercomputer Authority'', David Young, CSC ([http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/Ala%20Super%20Computer%20UAB_CI_day_Aug_08.ppt ppt], [http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/Ala%20Super%20Computer%20UAB_CI_day_Aug_08.pdf pdf])

	'''11:20 – 11:50''' ''Cyberinfrastructure for Research Teams'', John-Paul Robinson, UAB HPC Services		'''11:20 – 11:50''' ''Cyberinfrastructure for Research Teams'', John-Paul Robinson, UAB HPC Services ([http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/John-Paul_Robinson_UAB_CIDay2008.ppt ppt], [http://lab.ac.uab.edu/~jpr/ciday/2008/presentations/John-Paul_Robinson_UAB_CIDay2008.pdf pdf])

	'''11:50 – noon Questions & Answers'''		'''11:50 – noon Questions & Answers'''
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	* '''Dynamic BLAST – an Effective and Efficient BLAST Wrapper for the Grid''', Enis Afgan (Student, Dept of CIS, UAB) and Purushotham Bangalore (Dept of CIS, UAB)		* '''Dynamic BLAST – an Effective and Efficient BLAST Wrapper for the Grid''', Enis Afgan (Student, Dept of CIS, UAB) and Purushotham Bangalore (Dept of CIS, UAB)

	* '''Web-Enabled Grid Authentication''', John-Paul Robinson (HPCS, UAB), Jill Gemmill, Pravin Joshi, Purushotham Bangalore, YiYi Chen, Silbia Peechakara, Song Zhou, Prahalad Achutharo		* '''Web-Enabled Grid Authentication''', John-Paul Robinson (HPCS, UAB), Jill Gemmill, Pravin Joshi, Purushotham Bangalore, YiYi Chen, Silbia Peechakara, Song Zhou, Prahalad Achutharo ([http://lab.ac.uab.edu/~jpr/ciday/2008/posters/websso-grid2005.pdf pdf])

	* '''Research Computing Support and Infrastructure Services: Powering Statistical Genetics in the Grid Using GRIDway to Automate R-Based Workflows''', John-Paul Robinson (HPCS, UAB) and Poornima Pochana (HPCS, UAB)		* '''Research Computing Support and Infrastructure Services: Powering Statistical Genetics in the Grid Using GRIDway to Automate R-Based Workflows''', John-Paul Robinson (HPCS, UAB) and Poornima Pochana (HPCS, UAB) ([http://lab.ac.uab.edu/~jpr/ciday/2008/posters/Research_Computing_Support_and_Infrastructure_Services-UAB-CIDay2008.pdf pdf])

	* '''Grid Tastes Better with gRAVI: Developing caGRID Services in the Cloud Using the Introduce Toolkit and gRAVI''', John-Paul Robinson (HPCS, UAB) and Christie Bellah (HPCS, UAB)		* '''Grid Tastes Better with gRAVI: Developing caGRID Services in the Cloud Using the Introduce Toolkit and gRAVI''', John-Paul Robinson (HPCS, UAB) and Christie Bellah (HPCS, UAB) ([http://lab.ac.uab.edu/~jpr/ciday/2008/posters/Grid_Tastes_Better_with_gRAVI-UAB-CIDay2008.pdf pdf])

			* '''Powering Statistical Genetics with the Grid: Using GridWay to Automate R-based Workflows''', John-Paul Robinson (HPCS, UAB) and Poornima Pochana (HPCS,UAB) ([http://lab.ac.uab.edu/~jpr/ciday/2008/posters/Statistical_Genetics_and_Grid-UAB-CIDay2008.pdf pdf])

	* '''Hole Patching in Unstructured Mesh using NURBS Surfaces''', Amitesh Kumar (Student, ME), Dough Ross, Dr. Yasushi Ito, Dr. Alan Shih (Advisor, ME)		* '''Hole Patching in Unstructured Mesh using NURBS Surfaces''', Amitesh Kumar (Student, ME), Dough Ross, Dr. Yasushi Ito, Dr. Alan Shih (Advisor, ME)
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	* '''Geometry Design, Mesh Generation and Wind Field Simulation''', Kevin Nord (Student, ME) and Dr. Alan Shih (Advisor, ME)		* '''Geometry Design, Mesh Generation and Wind Field Simulation''', Kevin Nord (Student, ME) and Dr. Alan Shih (Advisor, ME)

	* '''~~Your poster title:~~ Validation of Turbulent Transition Models''', Prapanj Ganeshan Radhamony (Student, ME), Kshitij D Neroorkar, Dr. Gary Cheng (Advisor, ME)		* '''Validation of Turbulent Transition Models''', Prapanj Ganeshan Radhamony (Student, ME), Kshitij D Neroorkar, Dr. Gary Cheng (Advisor, ME)

	* '''Geometry and Mesh Generation Template System for Unmanned Aerial Vehicles (UAVs)''', Blair Farley (Student, ME) and Dr. Alan Shih (Advisor, ME)		* '''Geometry and Mesh Generation Template System for Unmanned Aerial Vehicles (UAVs)''', Blair Farley (Student, ME) and Dr. Alan Shih (Advisor, ME)