SPPARKS - Revision history

Tanthony@uab.edu at 14:17, 4 April 2012

2012-04-04T14:17:46Z

← Older revision		Revision as of 14:17, 4 April 2012
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	qstat -u $USER		qstat -u $USER
	</pre>		</pre>

			[[Category:Software]]

Tanthony@uab.edu at 19:04, 2 April 2012

2012-04-02T19:04:48Z

← Older revision		Revision as of 19:04, 2 April 2012
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	SPPARKS is a kinetic Monte Carlo (KMC) code designed to run efficiently on parallel computers using both KMC and Metropolis Monte Carlo algorithms. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL).		SPPARKS is a kinetic Monte Carlo (KMC) code designed to run efficiently on parallel computers using both KMC and Metropolis Monte Carlo algorithms. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL).

	'''Project website:'''http://www.sandia.gov/~sjplimp~~/spparks~~/		'''Project website:'''http://www.sandia.gov/~sjplimp/

	== Steps to run SPPARKS ==		== Steps to run SPPARKS ==

Tanthony@uab.edu at 18:53, 2 April 2012

2012-04-02T18:53:02Z

← Older revision		Revision as of 18:53, 2 April 2012
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	SPPARKS is a kinetic Monte Carlo (KMC) code designed to run efficiently on parallel computers using both KMC and Metropolis Monte Carlo algorithms. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL).		SPPARKS is a kinetic Monte Carlo (KMC) code designed to run efficiently on parallel computers using both KMC and Metropolis Monte Carlo algorithms. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL).

			'''Project website:'''http://www.sandia.gov/~sjplimp/spparks/

	== Steps to run SPPARKS ==		== Steps to run SPPARKS ==

Tanthony@uab.edu: added generic stub

2012-03-19T15:27:33Z

added generic stub

← Older revision		Revision as of 15:27, 19 March 2012
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			{{Generic_stub}}


	[http://www.sandia.gov/~sjplimp/spparks/doc/Manual.html SPPARKS] stands for Stochastic Parallel PARticle Kinetic Simulator.		[http://www.sandia.gov/~sjplimp/spparks/doc/Manual.html SPPARKS] stands for Stochastic Parallel PARticle Kinetic Simulator.

Ppreddy@uab.edu: add submission and monitor info

2010-01-04T21:43:51Z

add submission and monitor info

← Older revision		Revision as of 21:43, 4 January 2010
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	exit 0		exit 0

			</pre>

			Then submit that script with
			<pre>
			qsub name-of-script-above
			</pre>

			Check on it with qstat.
			<pre>
			qstat -u $USER
	</pre>		</pre>

Ppreddy@uab.edu: fix typo

2010-01-04T21:32:14Z

fix typo

← Older revision		Revision as of 21:32, 4 January 2010
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	</pre>		</pre>

	A simple ~~SGE~~ script to start executing SPPARKS on an SGE scheduler		A simple script to start executing SPPARKS on an SGE scheduler

	<pre>		<pre>

Ppreddy@uab.edu: initial:spparks

2010-01-04T21:31:19Z

initial:spparks

New page

[http://www.sandia.gov/~sjplimp/spparks/doc/Manual.html SPPARKS] stands for Stochastic Parallel PARticle Kinetic Simulator.

SPPARKS is a kinetic Monte Carlo (KMC) code designed to run efficiently on parallel computers using both KMC and Metropolis Monte Carlo algorithms. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL).

== Steps to run SPPARKS ==

Once you log into Cheaha, set up your environment for SPPARKS with the following
<pre>
module load spparks/spparks
</pre>

A simple SGE script to start executing SPPARKS on an SGE scheduler

<pre>
#!/bin/bash
#$ -S /bin/bash
#$ -cwd
#$ -j y
#
#$ -N spparks_test
#$ -pe mpich2 50
#
# Job runtime max (23 hours)
#$ -l h_rt=923:00:00,s_rt=922:55:00
#
#$ -M YOUR_EMAIL_ADDRESS
#$ -m eas
#
# Load the appropriate module file(s) for your job
. /etc/profile.d/modules.sh
module load spparks/spparks
#$ -V

# This line is mandatory for MPICH2 jobs
export MPD_CON_EXT="sge_$JOB_ID.$SGE_TASK_ID"

# The order of arguments is important. Forst global, then local options.
mpiexec -machinefile $TMPDIR/machines -n $NSLOTS ${PWD}/spk_linux < ${PWD}/in.potts

exit 0

</pre>