NgsCctsVcflib - Revision history

Curtish@uab.edu: /* Build details */

2014-02-24T18:56:35Z

Build details

← Older revision		Revision as of 18:56, 24 February 2014
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	== Build details ==		== Build details ==
	~~{{{~~
			<nowiki># setup
	mkdir -p /share/apps/ngs-ccts/vcflib/20140224		mkdir -p /share/apps/ngs-ccts/vcflib/20140224

			# get latest code
	git clone --recursive git://github.com/ekg/vcflib.git		git clone --recursive git://github.com/ekg/vcflib.git
	~~cd vcflib~~
			# build

	# get latest gcc (older, default version failed to compile in fsom/ -see		# get latest gcc (older, default version failed to compile in fsom/ -see
	module load gcc/4.8.1		module load gcc/4.8.1
			cd vcflib
	make		make

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	mkdir /share/apps/ngs-ccts/modulefiles/vcflib		mkdir /share/apps/ngs-ccts/modulefiles/vcflib
	vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024		vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024
			</nowiki>
	~~}}}~~

Curtish@uab.edu: /* To use */

2014-02-24T18:55:21Z

To use

← Older revision		Revision as of 18:55, 24 February 2014
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	== To use ==		== To use ==

	<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>		<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>

	== Build details ==		== Build details ==

Curtish@uab.edu: /* To use */

2014-02-24T18:55:12Z

To use

← Older revision		Revision as of 18:55, 24 February 2014
Line 10:		Line 10:
	== To use ==		== To use ==

	<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>		<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>

	== Build details ==		== Build details ==

Curtish@uab.edu: /* To use */

2014-02-24T18:55:04Z

To use

← Older revision		Revision as of 18:55, 24 February 2014
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	= Version 20140224 =		= Version 20140224 =
	== To use ==		== To use ==
	~~{{{~~
	module load ngs-ccts/vcflib/20140224		<nowiki>module load ngs-ccts/vcflib/20140224</nowiki>
	~~}}}~~

	== Build details ==		== Build details ==

Curtish@uab.edu at 18:54, 24 February 2014

2014-02-24T18:54:06Z

← Older revision		Revision as of 18:54, 24 February 2014
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	= ~~vcflib~~ =		= Overview =

	https://github.com/ekg/vcflib		https://github.com/ekg/vcflib
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	It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html		It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html

	== Version 20140224 ==		= Version 20140224 =
			== To use ==
	=== To use ===
	{{{		{{{
	module load ngs-ccts/vcflib/20140224		module load ngs-ccts/vcflib/20140224
	}}}		}}}

	=== Build details ===		== Build details ==

	{{{		{{{
	mkdir -p /share/apps/ngs-ccts/vcflib/20140224		mkdir -p /share/apps/ngs-ccts/vcflib/20140224

Curtish@uab.edu: Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (..."

2014-02-24T18:53:32Z

Created page with "= vcflib = https://github.com/ekg/vcflib this project does not have release or tags. It was originally installed to have access to the vcfallelicprimitives referenced in (..."

New page

= vcflib =

https://github.com/ekg/vcflib

this project does not have release or tags.

It was originally installed to have access to the vcfallelicprimitives referenced in (Zook et al 2014) "Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls" http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2835.html

== Version 20140224 ==

=== To use ===
{{{
module load ngs-ccts/vcflib/20140224
}}}

=== Build details ===

{{{
mkdir -p /share/apps/ngs-ccts/vcflib/20140224
git clone --recursive git://github.com/ekg/vcflib.git
cd vcflib

# get latest gcc (older, default version failed to compile in fsom/ -see
module load gcc/4.8.1

make

# create module file
# it adds $VER_DIR/vcflib/bin to PATH
mkdir /share/apps/ngs-ccts/modulefiles/vcflib
vi /share/apps/ngs-ccts/modulefiles/vcflib/20142024

}}}