https://docs.uabgrid.uab.edu/w/index.php?action=history&feed=atom&title=NgsCctsGeneWiseNgsCctsGeneWise - Revision history2026-06-19T09:30:26ZRevision history for this page on the wikiMediaWiki 1.38.2https://docs.uabgrid.uab.edu/w/index.php?title=NgsCctsGeneWise&diff=4476&oldid=prevCurtish@uab.edu: add GeneWise2.2.0 for VICUNA support2013-03-26T15:50:38Z<p>add GeneWise2.2.0 for VICUNA support</p>
<p><b>New page</b></p><div>[[NgsCcts]] back to top<br />
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Needed for VICUNA package [[NgsCctsVicuna]]<br />
<br />
= Download and build =<br />
<br />
cd /share/apps/ngs-ccts<br />
# get and unpack<br />
wget -O - ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/wise2.2.0.tar.gz | tar xzvf -<br />
cd wise2.2.0/src<br />
make all<br />
make test<br />
cd ..<br />
ln -s src/bin .<br />
# more test<br />
export WISECONFIGDIR=/share/apps/ngs-ccts/wise2.2.0/wisecfg/<br />
bin/genewise test_data/road.pep test_data/human.genomic<br />
<br />
= Env Vars CORRECTED =<br />
<br />
You must set your WISECONFIGDIR to the config directory<br />
before using the programs<br />
<br />
export WISECONFIGDIR=/share/apps/ngs-ccts/wise2.2.0/wisecfg/</div>Curtish@uab.edu