MATLAB workshop 2011 - Revision history

Tanthony@uab.edu: added text at the beginign to inform about the changes in R2012a

2012-03-12T14:13:29Z

added text at the beginign to inform about the changes in R2012a

← Older revision		Revision as of 14:13, 12 March 2012
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	'''tanthony@uab.edu'''		'''tanthony@uab.edu'''

			The following instructions and code have been tested and verified on Matlab R2010b, R2011a, and R2011b. The instruction for installation and some code needs to be modified because of the changes introduces in R2012a.

	==Introduction ==		==Introduction ==

Tanthony@uab.edu: /* Introduction */ added avaialable to students

2012-02-07T16:12:20Z

Introduction: added avaialable to students

← Older revision		Revision as of 16:12, 7 February 2012
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	In January 2011, UAB acquired a [[2011_UAB_MATLAB_site_license_software \| site license]] for MATLAB that allows faculty, staff, post-docs, and graduate students to use MATLAB, Simulink, and 42 toolboxes (including the parallel toolbox) for research activities on campus and personal systems. Additionally, MATLAB is available to students on campus computer systems.		In January 2011, UAB acquired a [[2011_UAB_MATLAB_site_license_software \| site license]] for MATLAB that allows faculty, staff, post-docs, and graduate students to use MATLAB, Simulink, and 42 toolboxes (including the parallel toolbox) for research activities on campus and personal systems. Additionally, from January 2012 MATLAB is available to students on campus and personal computer systems.


	== Install and Configure MATLAB ==		== Install and Configure MATLAB ==

Tanthony@uab.edu: added MATLAB support template and category

2011-09-21T16:38:48Z

added MATLAB support template and category

← Older revision		Revision as of 16:38, 21 September 2011
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	./matlabtest 10		./matlabtest 10



			{{MATLAB Support}}

			[[Category:MATLAB]]

Tanthony@uab.edu at 16:25, 21 September 2011

2011-09-21T16:25:08Z

← Older revision		Revision as of 16:25, 21 September 2011
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			'''Presenter - Thomas Anthony'''

			'''UAB IT Research Computing'''

			'''tanthony@uab.edu'''

			==Introduction ==

	'''[[wikipedia:MATLAB\|MATLAB]]''' ('''mat'''rix '''lab'''oratory) is a [[wikipedia:Numerical analysis\|numerical computing]] environment and [[wikipedia:fourth-generation programming language\|fourth-generation programming language]]. Developed by [[wikipedia:MathWorks\|Mathworks]], MATLAB allows [[wikipedia:matrix (mathematics)\|matrix]] manipulations, plotting of [[wikipedia:function (mathematics)\|functions]] and data, implementation of [[wikipedia:algorithm\|algorithm]]s, creation of [[wikipedia:user interface\|user interface]]s, and interfacing with programs written in other languages, including [[wikipedia:C (programming language)\|C]], [[wikipedia:C++\|C++]], and [[wikipedia:Fortran\|Fortran]]. An additional package, [[wikipedia:Simulink\|Simulink]], adds graphical multi-domain simulation and [[wikipedia:Model based design\|Model-Based Design]] for [[wikipedia:dynamical system\|dynamic]] and [[wikipedia:embedded systems\|embedded systems]].		'''[[wikipedia:MATLAB\|MATLAB]]''' ('''mat'''rix '''lab'''oratory) is a [[wikipedia:Numerical analysis\|numerical computing]] environment and [[wikipedia:fourth-generation programming language\|fourth-generation programming language]]. Developed by [[wikipedia:MathWorks\|Mathworks]], MATLAB allows [[wikipedia:matrix (mathematics)\|matrix]] manipulations, plotting of [[wikipedia:function (mathematics)\|functions]] and data, implementation of [[wikipedia:algorithm\|algorithm]]s, creation of [[wikipedia:user interface\|user interface]]s, and interfacing with programs written in other languages, including [[wikipedia:C (programming language)\|C]], [[wikipedia:C++\|C++]], and [[wikipedia:Fortran\|Fortran]]. An additional package, [[wikipedia:Simulink\|Simulink]], adds graphical multi-domain simulation and [[wikipedia:Model based design\|Model-Based Design]] for [[wikipedia:dynamical system\|dynamic]] and [[wikipedia:embedded systems\|embedded systems]].

Tanthony@uab.edu: /* Distributed Job */

2011-09-16T18:45:35Z

Distributed Job

← Older revision		Revision as of 18:45, 16 September 2011
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	<pre>%always set these variables		<pre>%always set these variables
	%matlab_ver = '~~R201ib~~'; % (MATLAB release supported by your license) R2009a R2009b R2010a		%matlab_ver = 'R2011b'; % (MATLAB release supported by your license) R2009a R2009b R2010a
	email = 'YOUREMAILID'; % your email address		email = 'YOUREMAILID'; % your email address
	email_opt = 'a'; % qsub email options		email_opt = 'a'; % qsub email options
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	</pre>		</pre>


	=== Shell Script Using MATLAB ===		=== Shell Script Using MATLAB ===

Tanthony@uab.edu at 18:38, 16 September 2011

2011-09-16T18:38:54Z

← Older revision		Revision as of 18:38, 16 September 2011
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	c=isprime(i); %check if every number between start & final is prime		c=isprime(i); %check if every number between start & final is prime
	if c==1 % if it is , ~~coutns~~ it a ~~sprime~~		if c==1 % if it is , counts it as a prime number
	i;		i;
	a=a+c;		a=a+c;
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	<pre>		<pre>
	%always set these variables		%always set these variables
	%matlab_ver = '~~R2010b~~'; % (MATLAB release supported by your license) R2009a R2009b R2010a		%matlab_ver = 'R2011b'; % (MATLAB release supported by your license) R2009a R2009b R2010a
	email = '~~tanthony@uab.edu~~'; % your email address		email = 'YOUREMAILID'; % your email address
	email_opt = 'a'; % qsub email options		email_opt = 'a'; % qsub email options
	h_rt = '4:07:00'; % hard wall time (time required to run this job)		h_rt = '1:07:00'; % hard wall time (time required to run this job)
	vf = '2G'; % Amount of memory need per task		vf = '2G'; % Amount of memory need per task

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	% scripts depends on in USERFUNCTION		% scripts depends on in USERFUNCTION

	job1 = batch('~~localScript~~', 'FileDependencies', {'~~localScript~~.m'});		job1 = batch('USERmFILE', 'FileDependencies', {'USERFUNCTION.m'});

	disp('Job submitted..')		disp('Job submitted..')
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	<pre>%always set these variables		<pre>%always set these variables
	%matlab_ver = 'R2011b'; % (MATLAB release supported by your license) R2009a R2009b R2010a		%matlab_ver = 'R2011b'; % (MATLAB release supported by your license) R2009a R2009b R2010a
	email = '~~tanthony@uab.edu~~'; % your email address		email = 'YOUREMAILID'; % your email address
	email_opt = 'a'; % qsub email options		email_opt = 'a'; % qsub email options
	h_rt = '1:07:00'; % hard wall time		h_rt = '1:07:00'; % hard wall time
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	tic		tic
	% start of user specific commands		% start of user specific commands
	job2= batch('~~localScript~~', 'matlabpool', max_cpu_slots, 'FileDependencies', {'~~primenofun.m~~'});		job2= batch('USERmFile', 'matlabpool', max_cpu_slots, 'FileDependencies', {'USERFUNCTIONS'});

	disp('Job submitted..')		disp('Job submitted..')
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	<pre>%always set these variables		<pre>%always set these variables
	%matlab_ver = 'R201ib'; % (MATLAB release supported by your license) R2009a R2009b R2010a		%matlab_ver = 'R201ib'; % (MATLAB release supported by your license) R2009a R2009b R2010a
	email = '~~tanthony@uab.edu~~'; % your email address		email = 'YOUREMAILID'; % your email address
	email_opt = 'a'; % qsub email options		email_opt = 'a'; % qsub email options
	h_rt = '4:07:00'; % hard wall time		h_rt = '1:07:00'; % hard wall time
	vf = '2G'; % Amount of memory need per task		vf = '2G'; % Amount of memory need per task
	%queue = 'sipsey.q' % specify queue		%queue = 'sipsey.q' % specify queue
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	get(sched)		get(sched)
	job3 = createJob(sched);		job3 = createJob(sched);
	~~tic~~
	% start of user specific commands		% start of user specific commands
	diff=200;		diff=200;
	for check=90000:diff:91000		for check=90000:diff:91000
	createTask(job3, @primenofun,4, {check});		%createTask(job3, @primenofun,4, {check});
			createTask(job3, @USERFUNCTION,4, {check});

	~~%createTask(job, @primenofun,4, {100});~~
	end		end

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	disp('Job submitted..')		disp('Job submitted..')
	datestr(clock)		datestr(clock)


	% waitForState(job2, 'finished');		% waitForState(job2, 'finished');
	%		%
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	% save newout.mat		% save newout.mat
	%		%
	~~% toc~~
	</pre>		</pre>

Tanthony@uab.edu: /* Shell Script Using MATLAB */

2011-09-16T18:16:27Z

Shell Script Using MATLAB

← Older revision		Revision as of 18:16, 16 September 2011
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	chmod +x matlabtest		chmod +x matlabtest

	./matlabtest 10		./matlabtest 10

Tanthony@uab.edu: added all codes

2011-09-16T18:15:35Z

added all codes

Show changes

Tanthony@uab.edu at 16:17, 16 September 2011

2011-09-16T16:17:35Z

@@ Line 133: / Line 133: @@
 primenofun.m
-<pre> </pre>
+<pre> function [l,count,ratios,q]=primenofun(final)
 === Offload Serial Job to Cheaha using Submit Script===

Tanthony@uab.edu at 16:14, 16 September 2011

2011-09-16T16:14:13Z

@@ Line 108: / Line 108: @@
 === Serial Job ===
-localSubmit.m
+localScript.m
-<pre> </pre>
+<pre>
 primenofun.m