IMPUTE2 - Revision history

Tanthony@uab.edu: Category:Bioinformatics

2012-04-04T15:14:10Z

← Older revision		Revision as of 15:14, 4 April 2012
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	[[Category:Software]]		[[Category:Software]][[Category:Bioinformatics]]

Tanthony@uab.edu: added category software

2012-04-04T14:02:44Z

added category software

← Older revision		Revision as of 14:02, 4 April 2012
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	module load impute/impute		module load impute/impute
	</pre>		</pre>


			[[Category:Software]]

Tanthony@uab.edu at 19:48, 2 April 2012

2012-04-02T19:48:59Z

← Older revision		Revision as of 19:48, 2 April 2012
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	'''Project website:''' https://mathgen.stats.ox.ac.uk/impute/impute_v2.html		'''Project website:''' https://mathgen.stats.ox.ac.uk/impute/impute_v2.html

			====Load SGE module====
	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:
	<pre>		<pre>

Tanthony@uab.edu at 18:41, 2 April 2012

2012-04-02T18:41:22Z

← Older revision		Revision as of 18:41, 2 April 2012
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	[https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE]is a program for estimating ("imputing") unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE v2]implements a major extension that was introduced in Howie et al. (2009). [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].		[https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE]is a program for estimating ("imputing") unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE v2]implements a major extension that was introduced in Howie et al. (2009). [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].

	Project ~~Website~~: https://mathgen.stats.ox.ac.uk/impute/impute_v2.html		'''Project website:''' https://mathgen.stats.ox.ac.uk/impute/impute_v2.html


	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:

Tanthony@uab.edu at 15:33, 20 March 2012

2012-03-20T15:33:52Z

← Older revision		Revision as of 15:33, 20 March 2012
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	https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE]is a program for estimating ("imputing") unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE v2]implements a major extension that was introduced in Howie et al. (2009). [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].		[https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE]is a program for estimating ("imputing") unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE v2]implements a major extension that was introduced in Howie et al. (2009). [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].

	Project Website: https://mathgen.stats.ox.ac.uk/impute/impute_v2.html		Project Website: https://mathgen.stats.ox.ac.uk/impute/impute_v2.html

Tanthony@uab.edu: adde links and wiki description.

2012-03-20T15:33:22Z

adde links and wiki description.

← Older revision		Revision as of 15:33, 20 March 2012
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	IMPUTE v2 is a ~~new~~ genotype ~~imputation algorithm based on ideas~~ described in [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].		https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE]is a program for estimating ("imputing") unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. There are currently three different versions of the IMPUTE software available for download: version 0.5 implements the methodology described in Marchini et al. (2007); version 1 is essentially the same as version 0.5, with a couple of added features; and [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html IMPUTE v2]implements a major extension that was introduced in Howie et al. (2009). [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].

	~~For the specific version~~		Project Website: https://mathgen.stats.ox.ac.uk/impute/impute_v2.html


			The following Modules files should be loaded for this package:
	<pre>		<pre>
	module load impute/impute-2.1.2		module load impute/impute-2.1.2

Tanthony@uab.edu: started page

2012-03-19T14:07:47Z

started page

New page

{{Generic_stub}}

IMPUTE v2 is a new genotype imputation algorithm based on ideas described in [https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#reference_2 Howie et al. (2009)].

For the specific version
<pre>
module load impute/impute-2.1.2
</pre>

Or to use the latest
<pre>
module load impute/impute
</pre>