FREGENE - Revision history

Tanthony@uab.edu: added category bioinformatics

2012-04-04T15:09:39Z

added category bioinformatics

← Older revision		Revision as of 15:09, 4 April 2012
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	</pre>		</pre>

	[[Category:Software]]		[[Category:Software]][[Category:Bioinformatics]]

Tanthony@uab.edu: added category software

2012-04-04T13:58:45Z

added category software

← Older revision		Revision as of 13:58, 4 April 2012
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	module load fregene/fregene-2008		module load fregene/fregene-2008
	</pre>		</pre>

			[[Category:Software]]

Tanthony@uab.edu at 19:46, 2 April 2012

2012-04-02T19:46:05Z

← Older revision		Revision as of 19:46, 2 April 2012
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	'''Project website:''' http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html		'''Project website:''' http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html

			====Load SGE module====
	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:
	<pre>		<pre>
	module load fregene/fregene-2008		module load fregene/fregene-2008
	</pre>		</pre>

Tanthony@uab.edu at 18:15, 2 April 2012

2012-04-02T18:15:39Z

← Older revision		Revision as of 18:15, 2 April 2012
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	[http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/node1.html FREGENE] is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations. Unlike coalescent-based simulation tools, such as MS (Hudson, 2002), FREGENE works forwards-in-time which allows a wide range of demographic and selection scenarios to be implemented. Many such models are already incorporated into FREGENE, and since it is open source users can modify or extend these. Coalescent methods have difficulty incorporating large amounts of gene conversion or crossover (Hoggart et al. 2007), whereas these pose no particular problem for FREGENE. FREGENE offers a flexible model for recombination hotspots, and can readily simulate regions up to tens of Mb on a standard desktop computer.		[http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/node1.html FREGENE] is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations. Unlike coalescent-based simulation tools, such as MS (Hudson, 2002), FREGENE works forwards-in-time which allows a wide range of demographic and selection scenarios to be implemented. Many such models are already incorporated into FREGENE, and since it is open source users can modify or extend these. Coalescent methods have difficulty incorporating large amounts of gene conversion or crossover (Hoggart et al. 2007), whereas these pose no particular problem for FREGENE. FREGENE offers a flexible model for recombination hotspots, and can readily simulate regions up to tens of Mb on a standard desktop computer.

	Project website: http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html		'''Project website:''' http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html


	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:

Tanthony@uab.edu: Created page with the generic stub, added links and wiki description

2012-03-20T16:09:15Z

Created page with the generic stub, added links and wiki description

New page

{{Generic_stub}}

[http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/node1.html FREGENE] is a C++ program that simulates sequence-like data over large genomic regions in large diploid populations. Unlike coalescent-based simulation tools, such as MS (Hudson, 2002), FREGENE works forwards-in-time which allows a wide range of demographic and selection scenarios to be implemented. Many such models are already incorporated into FREGENE, and since it is open source users can modify or extend these. Coalescent methods have difficulty incorporating large amounts of gene conversion or crossover (Hoggart et al. 2007), whereas these pose no particular problem for FREGENE. FREGENE offers a flexible model for recombination hotspots, and can readily simulate regions up to tens of Mb on a standard desktop computer.

Project website: http://www.ebi.ac.uk/projects/BARGEN/download/FREGEN/documentation_html.html

The following Modules files should be loaded for this package:
<pre>
module load fregene/fregene-2008
</pre>