Cufflinks - Revision history

Tanthony@uab.edu: added category bioinformatics NGS

2012-04-04T15:05:53Z

added category bioinformatics NGS

← Older revision		Revision as of 15:05, 4 April 2012
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	[[Category:Software]]		[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]

Tanthony@uab.edu: added category software

2012-04-04T13:47:33Z

added category software

← Older revision		Revision as of 13:47, 4 April 2012
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	module load cufflinks/cufflinks		module load cufflinks/cufflinks
	</pre>		</pre>


			[[Category:Software]]

Tanthony@uab.edu at 19:44, 2 April 2012

2012-04-02T19:44:04Z

← Older revision		Revision as of 19:44, 2 April 2012
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	'''Project website:''' http://cufflinks.cbcb.umd.edu/		'''Project website:''' http://cufflinks.cbcb.umd.edu/

			====Load SGE module====
	The following Modules file should be loaded for this package:		The following Modules file should be loaded for this package:
	<pre>		<pre>
	module load cufflinks/cufflinks		module load cufflinks/cufflinks
	</pre>		</pre>

Tanthony@uab.edu at 18:13, 2 April 2012

2012-04-02T18:13:07Z

← Older revision		Revision as of 18:13, 2 April 2012
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	Cufflinks is a collaborative effort between the [http://bio.math.berkeley.edu/ Laboratory for Mathematical and Computational Biology], led by Lior Pachter at UC Berkeley, Steven Salzberg's [http://genomics.jhu.edu/ computational genomics group] at the Institute of Genetic Medicine at Johns Hopkins University, and Barbara Wold's lab at Caltech.		Cufflinks is a collaborative effort between the [http://bio.math.berkeley.edu/ Laboratory for Mathematical and Computational Biology], led by Lior Pachter at UC Berkeley, Steven Salzberg's [http://genomics.jhu.edu/ computational genomics group] at the Institute of Genetic Medicine at Johns Hopkins University, and Barbara Wold's lab at Caltech.

	~~Poject Website~~: http://cufflinks.cbcb.umd.edu/		'''Project website:''' http://cufflinks.cbcb.umd.edu/


	The following Modules file should be loaded for this package:		The following Modules file should be loaded for this package:

Tanthony@uab.edu: created page with generic stub

2012-04-02T17:50:01Z

created page with generic stub

New page

{{Generic_stub}}

[http://cufflinks.cbcb.umd.edu/ Cufflinks]assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one, taking into account biases in library preparation protocols.

Cufflinks is a collaborative effort between the [http://bio.math.berkeley.edu/ Laboratory for Mathematical and Computational Biology], led by Lior Pachter at UC Berkeley, Steven Salzberg's [http://genomics.jhu.edu/ computational genomics group] at the Institute of Genetic Medicine at Johns Hopkins University, and Barbara Wold's lab at Caltech.

Poject Website: http://cufflinks.cbcb.umd.edu/

The following Modules file should be loaded for this package:
<pre>
module load cufflinks/cufflinks
</pre>