Bowtie - Revision history

Tanthony@uab.edu: added category NGS

2012-04-04T15:05:29Z

added category NGS

← Older revision		Revision as of 15:05, 4 April 2012
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	</pre>		</pre>

	[[Category:Software]][[Category:Bioinformatics]]		[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]

Tanthony@uab.edu: added category bioinformatics

2012-04-04T15:05:05Z

added category bioinformatics

← Older revision		Revision as of 15:05, 4 April 2012
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	</pre>		</pre>

	[[Category:Software]]		[[Category:Software]][[Category:Bioinformatics]]

Tanthony@uab.edu: added category software

2012-04-04T13:45:45Z

added category software

← Older revision		Revision as of 13:45, 4 April 2012
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	module load bowtie/bowtie-0.10		module load bowtie/bowtie-0.10
	</pre>		</pre>

			[[Category:Software]]

Tanthony@uab.edu at 19:43, 2 April 2012

2012-04-02T19:43:05Z

← Older revision		Revision as of 19:43, 2 April 2012
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	'''Project website:''' http://bowtie-bio.sourceforge.net/tutorial.shtml		'''Project website:''' http://bowtie-bio.sourceforge.net/tutorial.shtml

			====Load SGE module====
	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:
	<pre>		<pre>
	module load bowtie/bowtie-0.10		module load bowtie/bowtie-0.10
	</pre>		</pre>

Tanthony@uab.edu at 18:11, 2 April 2012

2012-04-02T18:11:45Z

← Older revision		Revision as of 18:11, 2 April 2012
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	[http://bowtie-bio.sourceforge.net/tutorial.shtml Bowtie]is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.		[http://bowtie-bio.sourceforge.net/tutorial.shtml Bowtie]is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.

	~~A Bowtie tutorial is available here~~: http://bowtie-bio.sourceforge.net/tutorial.shtml		'''Project website:''' http://bowtie-bio.sourceforge.net/tutorial.shtml

	The following Modules files should be loaded for this package:		The following Modules files should be loaded for this package:

Tanthony@uab.edu: added link

2012-04-02T18:05:00Z

added link

← Older revision		Revision as of 18:05, 2 April 2012
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	{{Generic_stub}}		{{Generic_stub}}

	Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.		[http://bowtie-bio.sourceforge.net/tutorial.shtml Bowtie]is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.

	A Bowtie tutorial is available here: http://bowtie-bio.sourceforge.net/tutorial.shtml		A Bowtie tutorial is available here: http://bowtie-bio.sourceforge.net/tutorial.shtml

Tanthony@uab.edu: started page

2012-03-15T16:04:32Z

started page

New page

{{Generic_stub}}

Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). It supports alignment policies equivalent to Maq and SOAP but is substantially faster.

A Bowtie tutorial is available here: http://bowtie-bio.sourceforge.net/tutorial.shtml

The following Modules files should be loaded for this package:
<pre>
module load bowtie/bowtie-0.10
</pre>