https://docs.uabgrid.uab.edu/w/api.php?action=feedcontributions&user=Dls%40uab.edu&feedformat=atomCheaha - User contributions [en]2024-03-19T10:12:59ZUser contributionsMediaWiki 1.38.2https://docs.uabgrid.uab.edu/w/index.php?title=Research_Storage&diff=4784Research Storage2014-10-15T15:58:51Z<p>Dls@uab.edu: </p>
<hr />
<div>[[File:Example.jpg]]<br />
== Description ==<br />
== Request Storage ==<br />
== How to Access ==<br />
* From iMAC desktop running OS X, 10.9.5, use the following steps to mount Cheaha home directory for a BlazerID which has an establish account on Cheaha:<br />
** Click on "Go" from menu bar at top of screen;<br />
** New window "Connect to Server" opens;<br />
** There are two screens within "Connect to Server" window, which are: "Server Address:” and “Favorite Servers:”<br />
** For example, some possible server addresses within Favorite Servers:<br />
*** smb://uabfile.ad.uab.edu/ShareNAME, where ShareNAME is the name of a share on UABFILE;<br />
*** smb://138.26.XYZ.ABC, where XYZ.ABC is the complete IP address of a server within the UAB domain 138.68...<br />
*** smb://files.uabgrid.uab.edu<br />
** one can enter a new command in the "connect to Server" window.</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4682Template:UAB Research Computing Day 2013 Agenda2013-09-18T16:21:03Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: ''Innovative Solutions Build on OpenStack-Powered Cloud Solution'', [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 ''UAB Update from Alabama Supercompter Center'', David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 ''FISMA: What it means to UAB'', by Joseph W. Popenski III, Ph.D.; CISO and AVP-IT; CISSP; CPP; CISM; CFE. jwp3@uab.edu; (205)975-3117; See link for [[abstract]].<br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Purushotham (Puri) V. Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences, UAB<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson, System Architect Research Computing, UAB<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4681Template:UAB Research Computing Day 2013 Agenda2013-09-18T16:20:30Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: ''Innovative Solutions Build on OpenStack-Powered Cloud Solution'', [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 ''UAB Update from Alabama Supercompter Center'', David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 ''FISMA: What it means to UAB'', by Joseph W. Popenski III, Ph.D.; CISO and AVP-IT (acting); CISSP; CPP; CISM; CFE. jwp3@uab.edu; (205)975-3117; See link for [[abstract]].<br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Purushotham (Puri) V. Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences, UAB<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson, System Architect Research Computing, UAB<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Abstract&diff=4680Abstract2013-09-18T16:17:10Z<p>Dls@uab.edu: Created page with "'''Title''': FISMA: What it means to UAB! '''Abstract''': The Federal Information Security Management Act was passed in 2002 by Congress. This talk will review the highli..."</p>
<hr />
<div>'''Title''': FISMA: What it means to UAB!<br />
<br />
'''Abstract''': The Federal Information Security Management Act was passed in 2002 by Congress. This talk will review the highlights of that federal law, what UAB needs to do to comply with it, and how it impacts the research community.</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4679Template:UAB Research Computing Day 2013 Agenda2013-09-18T16:16:27Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 ''UAB Update from Alabama Supercompter Center'', David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 ''FISMA: What it means to UAB'', by Joseph W. Popenski III, Ph.D.; CISO and AVP-IT (acting); CISSP; CPP; CISM; CFE. jwp3@uab.edu; (205)975-3117; See link for [[abstract]].<br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Purushotham (Puri) V. Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences, UAB<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson, System Architect Research Computing, UAB<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4678Template:UAB Research Computing Day 2013 Agenda2013-09-17T19:05:25Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 UAB Update from Alabama Supercompter Center, David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 FISMA by Joseph W. Popenski III, Ph.D.; CISO and AVP-IT (acting); CISSP; CPP; CISM; CFE. jwp3@uab.edu; (205)975-3117; <br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Purushotham (Puri) V. Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences, UAB<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson, System Architect Research Computing, UAB<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4677Template:UAB Research Computing Day 2013 Agenda2013-09-17T19:01:16Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 UAB Update from Alabama Supercompter Center, David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 FISMA by Joseph W. Popenski III, Ph.D.; CISO and AVP-IT (acting); CISSP; CPP; CISM; CFE. jwp3@uab.edu; (205)975-3117; <br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Puri Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4676Template:UAB Research Computing Day 2013 Agenda2013-09-17T18:47:34Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
** 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
** 9:40-10:10 UAB Update from Alabama Supercompter Center, David Young, Ph.D., HPC Computational Specialist, CSC; dyoung@asc.edu; (256)971-7434<br />
** 10:00-10:20 FISMA by Joe Popenski, Ph.D. <br />
** 10:20-10:50 HPC Needs at Research Intensive Universities, Puri Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences<br />
** 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
** 11:10 - 11:50 UAB Shared Research Storage Solutions and Desktop Options, John-Paul Robinson<br />
* Noon - 12:45pm Lunch and Con<br />
* 1:00 - 3:00pm Bootcamp<br />
** 1:00 - 2:00pm HPC Bootcamp<br />
** 2:00 - 3:00pm Inaugural HPC User Group meeting</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4663Template:UAB Research Computing Day 2013 Agenda2013-09-13T17:38:25Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
* 9:40-10:10 UAB Update from Alabama Supercompter Center, David Young, ASC<br />
<br />
* 10:00-10:20 FISMA by Joe Popenski, Ph.D. <br />
<br />
* 10:20-10:50 HPC Needs at Research Intensive Universities, Puri Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences<br />
<br />
* 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
<br />
* 11:10 - 11:50 UAB Share Research Storage Solutions and Desktop Options, John-Paul Robinson, <br />
<br />
* Noon - 12:45pm Lunch<br />
<br />
* 1:00 -2:pm User Forum<br />
<br />
* Boot Camp: Cheaha and Storage<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4662Template:UAB Research Computing Day 2013 Agenda2013-09-11T18:14:33Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: Innovative Solutions Build on OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
* 9:40-10:10 UAB Update from Alabama Supercompter Center, David Young, ASC<br />
<br />
* 10:00-10:20 POSSIBLE TALK on FISMA by Joe Popenski, Ph.D. <br />
<br />
* 10:20-10:50 HPC Needs at Research Intensive Universities, Puri Bangalore, Ph.D., Associate Professor, Department of Computer and Information Sciences<br />
<br />
* 10:50- 11:10 Federal Mandate for Research Data Management Plan and Possible Solutions, David L. Shealy, Ph.D., Professor & Chair, Department of Physics, UAB<br />
<br />
* 11:10 - 11:50 UAB Share Research Storage Solutions and Desktop Options, John-Paul Robinson, <br />
<br />
* Noon - 12:45pm Lunch<br />
<br />
* 1:00 -2:pm User Forum<br />
<br />
* Boot Camp: Cheaha and Storage<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4661Template:UAB Research Computing Day 2013 Agenda2013-09-11T18:00:47Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: Innovative Solutions Build on Dell OpenStack-Powered Cloud Solution [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
* 9:40-10:10 UAB Update on Alabama IT 2012 Annual Report, Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:JosephBGeorge.jpg&diff=4660File:JosephBGeorge.jpg2013-09-11T17:47:02Z<p>Dls@uab.edu: Joseph B. George Sr. Director of the Cloud and Big Data Solutions Team at Dell</p>
<hr />
<div>Joseph B. George Sr. Director of the Cloud and Big Data Solutions Team at Dell</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Joseph_B._George&diff=4659Joseph B. George2013-09-11T17:45:38Z<p>Dls@uab.edu: Created page with " Joseph B. George Joseph B George Joseph B George is the Sr. Director of the Cloud and Big Data Solutions Team at Dell, the team is respon..."</p>
<hr />
<div><br />
[[File: JosephBGeorge.jpg|thumb|Joseph B. George]] <br />
<br />
Joseph B George<br />
<br />
Joseph B George is the Sr. Director of the Cloud and Big Data Solutions Team at Dell, the team is responsible for developing innovative solutions such as the Dell OpenStack-Powered Cloud Solution, the Dell Apache Hadoop Solution, the Dell Crowbar software framework, and key partnership solutions. Joseph also sits on the OpenStack Foundation Board of Directors.<br />
<br />
Prior to coming to Dell, Joseph held key strategy, product management, and technical roles at companies like HP, BMC Software, and Halliburton. Covering areas such as enterprise management software, virtual desktops infrastructure (VDI), scale out computing, and transaction management, Joseph has spent over 15 years in the areas of enterprise software, virtualization, and cloud technology.<br />
<br />
Joseph holds a bachelor’s degree in electrical and computer engineering, as well as a master’s in business administration (MBA), both from the University of Houston. He’s a tried and true Texan, and currently resides in Austin with his wife and two children.<br />
<br />
You can catch Joseph’s thoughts and opinions regularly at the JBGeorge Tech Blog (www.jbgeorge.net) and he can often be found talking tech on Twitter (@jbgeorge).</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4658Template:UAB Research Computing Day 2013 Agenda2013-09-11T17:34:06Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Joseph B. George]],Sr. Director of the Cloud and Big Data Solutions Team at Dell <br />
* 9:40-10:10 UAB IT 2012 Annual Report, Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Template:UAB_Research_Computing_Day_2013_Agenda&diff=4657Template:UAB Research Computing Day 2013 Agenda2013-09-11T16:04:59Z<p>Dls@uab.edu: Created page with "'''AGENDA for UAB 2013 Research Computing Day''' September 26, 2013 UAB Cudworth Building, 1919 University Blvd, UAB campus * 8:15-9:00 Registration & Continental Breakf..."</p>
<hr />
<div>'''AGENDA for UAB 2013 Research Computing Day'''<br />
<br />
September 26, 2013 <br />
<br />
UAB Cudworth Building, 1919 University Blvd, UAB campus<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 UAB IT 2012 Annual Report, Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Research_Computing_Day_2013&diff=4656Research Computing Day 20132013-09-11T15:56:09Z<p>Dls@uab.edu: </p>
<hr />
<div>The 2013 UAB Research Computing Day will be held '''September 26, 2013''' in Cudworth at 1919 University Blvd.<br />
<br />
Activities this year will include a symposium on Thursday, September 26, 2013 with invited talks and contributed talks from campus researchers. <br />
<br />
[[UAB Research Computing Day]] is dedicated to dialogs on science, engineering, and their ever present drive to advance the art of technology in opening new research frontiers. These dialogs connect with our daily operations, touch the far edges of the Internet, and intersect with the themes of national funding agencies and peer institutions. Please visit the [[UAB Research Computing Day|Research Computing Day]] page for an verview and history of past events.<br />
<br />
<br />
== Event Days and Times ==<br />
<br />
* 8:15 - 4:30pm, September 26, 2013, 2013 UAB Research Computing Day in Cudsworth Building, 1919 University Blvd.<br />
<br />
== Registration ==<br />
<br />
Registration and a continental breakfast will begin at 8:15 a.m., with the welcome and overview at 9 a.m. Lunch plans are being made. Pre-registration is required for lunch and should be completed by 5 p.m. on Tuesday, September 24th<br />
<br />
<br />
== Agenda ==<br />
<br />
[[UAB Research Computing Day 2013 Agenda]]<br />
<br />
[[Category:RCDay]]</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Research_Computing_Day_2013&diff=4626Research Computing Day 20132013-08-27T16:32:37Z<p>Dls@uab.edu: </p>
<hr />
<div>The 2013 UAB Research Computing Day will be held '''September 26, 2013''' in Cudworth at 1919 University Blvd.<br />
<br />
Activities this year will include a symposium on Thursday, September 26, 2013 with invited talks and contributed talks from campus researchers. <br />
<br />
[[UAB Research Computing Day]] is dedicated to dialogs on science, engineering, and their ever present drive to advance the art of technology in opening new research frontiers. These dialogs connect with our daily operations, touch the far edges of the Internet, and intersect with the themes of national funding agencies and peer institutions. Please visit the [[UAB Research Computing Day|Research Computing Day]] page for an verview and history of past events.<br />
<br />
<br />
== Event Days and Times ==<br />
<br />
* 8:15 - 4:30pm, September 26, 2013, 2013 UAB Research Computing Day in Cudsworth Building, 1919 University Blvd.<br />
<br />
== Registration ==<br />
<br />
Registration and a continental breakfast will begin at 8:15 a.m., with the welcome and overview at 9 a.m. Lunch plans are being made. Pre-registration is required for lunch and should be completed by 5 p.m. on Tuesday, September 24th<br />
<br />
<br />
== Agenda ==<br />
<br />
Being developed<br />
<br />
[[Category:RCDay2011]]</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Research_Computing_Day_2013&diff=4625Research Computing Day 20132013-08-27T16:30:58Z<p>Dls@uab.edu: Created page with "The 2013 UAB Research Computing Day will be held '''September 26, 2013''' in Cudworth at the Hill University Center, Alumni Auditorium. Activities this year will include a sy..."</p>
<hr />
<div>The 2013 UAB Research Computing Day will be held '''September 26, 2013''' in Cudworth at the Hill University Center, Alumni Auditorium.<br />
<br />
Activities this year will include a symposium on Thursday, September 13, 2012 with invited talks and contributed talks from campus researchers. <br />
<br />
[[UAB Research Computing Day]] is dedicated to dialogs on science, engineering, and their ever present drive to advance the art of technology in opening new research frontiers. These dialogs connect with our daily operations, touch the far edges of the Internet, and intersect with the themes of national funding agencies and peer institutions. Please visit the [[UAB Research Computing Day|Research Computing Day]] page for an verview and history of past events.<br />
<br />
<br />
== Event Days and Times ==<br />
<br />
* 8:15 - 4:30pm, September 13, 2012, 2012 UAB Research Computing Day in Cudsworth Building, 1919 University Blvd.<br />
<br />
== Registration ==<br />
<br />
Registration and a continental breakfast will begin at 8:15 a.m., with the welcome and overview at 9 a.m. Lunch plans are being made. Pre-registration is required for lunch and should be completed by 5 p.m. on Tuesday, September 24th<br />
<br />
<br />
== Agenda ==<br />
<br />
Being developed<br />
<br />
[[Category:RCDay2011]]</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=UAB_Research_Computing_Day&diff=4624UAB Research Computing Day2013-08-27T16:25:39Z<p>Dls@uab.edu: </p>
<hr />
<div>Research Computing Day is a dialog within the UAB research community about leveraging the power of computers to grow the depth of our investigation into the nature of the world that surrounds us. The annual event welcomes discussions on science, engineering, the arts and humanities focused on the drive to open new research frontiers with advances in technology.<br />
<br />
Whether computers are used to increase the accuracy of a model, interpret the ever-growing stream of data from new image collections and instruments, or engage with peers around the globe, UAB’s status as a leading research community depends on the ability to incorporate these capabilities into the research process. By participating in the dialog of Research Computing Day at UAB, researchers can share how they are using these methods to enhance their research, gain new insights from peers, and contribute their voices to the growth of research at UAB.<br />
<br />
== Background ==<br />
<br />
Since 2007, The [http://www.uab.edu/it Office of the Vice President for Information Technology] has sponsored an annual dialog on the role of technology in research. These events joined UAB with [https://wiki.internet2.edu/confluence/display/cidays national dialogs on the role of Cyberinfrastructure in research] held at campuses across the country.<br />
<br />
The [[UAB Research Computing Day 2011|2011 UAB Research Computing Day]] builds on the themes from the events of previous years and dons a new name intended to capture the broader interests of research that forever pushes technology in new directions to advance science.<br />
<br />
== Previous UAB Research Computing Days ==<br />
<br />
* 2007 -- Co-hosted along with the [http://asc.edu ASA] site visit, providing an overview of new services and upcoming launce of the UABgrid pilot. (No web record)<br />
* 2008 -- Focus on grid computing and collaboration technologies, in particular the caBIG program with guest speakers from Booz Allen Hamilton who managed the NCI caBIG program and SURA (agenda currently offline) <br />
* 2010 -- Featured introduction to Galaxy platform for genetic sequencing by Dell staff scientist (agenda currently offline)<br />
* [[2011]] -- Understanding growth of research computing support at peer institutions UNC and Emory <br />
* [[2012]] -- Growing data sciences at UAB<br />
* [[2013]] -- Open Stach at UAB<br />
[[Category:RCDay2011]</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=UAB_Research_Computing_Day&diff=4623UAB Research Computing Day2013-08-27T14:34:18Z<p>Dls@uab.edu: </p>
<hr />
<div>Research Computing Day is a dialog within the UAB research community about leveraging the power of computers to grow the depth of our investigation into the nature of the world that surrounds us. The annual event welcomes discussions on science, engineering, the arts and humanities focused on the drive to open new research frontiers with advances in technology.<br />
<br />
Whether computers are used to increase the accuracy of a model, interpret the ever-growing stream of data from new image collections and instruments, or engage with peers around the globe, UAB’s status as a leading research community depends on the ability to incorporate these capabilities into the research process. By participating in the dialog of Research Computing Day at UAB, researchers can share how they are using these methods to enhance their research, gain new insights from peers, and contribute their voices to the growth of research at UAB.<br />
<br />
== Background ==<br />
<br />
Since 2007, The [http://www.uab.edu/it Office of the Vice President for Information Technology] has sponsored an annual dialog on the role of technology in research. These events joined UAB with [https://wiki.internet2.edu/confluence/display/cidays national dialogs on the role of Cyberinfrastructure in research] held at campuses across the country.<br />
<br />
The [[UAB Research Computing Day 2011|2011 UAB Research Computing Day]] builds on the themes from the events of previous years and dons a new name intended to capture the broader interests of research that forever pushes technology in new directions to advance science.<br />
<br />
== Previous UAB Research Computing Days ==<br />
<br />
* 2007 -- Co-hosted along with the [http://asc.edu ASA] site visit, providing an overview of new services and upcoming launce of the UABgrid pilot. (No web record)<br />
* 2008 -- Focus on grid computing and collaboration technologies, in particular the caBIG program with guest speakers from Booz Allen Hamilton who managed the NCI caBIG program and SURA (agenda currently offline) <br />
* 2010 -- Featured introduction to Galaxy platform for genetic sequencing by Dell staff scientist (agenda currently offline)<br />
* [[2011]] -- Understanding growth of research computing support at peer institutions UNC and Emory <br />
* [[2012]] -- Growing data sciences at UAB<br />
* [[2013]] -- TBD<br />
[[Category:RCDay2011]</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43262012 Research Computing Day Agenda2012-10-25T14:56:30Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:Lefkowitz-UAB_IT_Day_1110_13Sept2012.pdf|Biomedical Infomatics: A Partnership for UAB]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data]], Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 [[Media:Microbiome Analysis-13sepV2_1330.pdf|Microbiome Analysis]], Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]] Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012_presented.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012_presented.pdf&diff=4325File:Research Computing Day Xujing Wang islet oscillation 1510 13Sept2012 presented.pdf2012-10-25T14:54:55Z<p>Dls@uab.edu: 17 slides presented</p>
<hr />
<div>17 slides presented</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43242012 Research Computing Day Agenda2012-10-25T14:10:50Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:Lefkowitz-UAB_IT_Day_1110_13Sept2012.pdf|Biomedical Infomatics: A Partnership for UAB]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data]], Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 [[Media:Microbiome Analysis-13sepV2_1330.pdf|Microbiome Analysis]], Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]] Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Microbiome_Analysis-13sepV2_1330.pdf&diff=4323File:Microbiome Analysis-13sepV2 1330.pdf2012-10-25T14:09:07Z<p>Dls@uab.edu: Microbiome Analysis, Sept 13, 2012: 13:30</p>
<hr />
<div>Microbiome Analysis, Sept 13, 2012: 13:30</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43222012 Research Computing Day Agenda2012-10-23T21:00:10Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:Lefkowitz-UAB_IT_Day_1110_13Sept2012.pdf|Biomedical Infomatics: A Partnership for UAB]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data]], Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]] Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation'', LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43212012 Research Computing Day Agenda2012-10-23T20:56:25Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:Lefkowitz-UAB_IT_Day_1110_13Sept2012.pdf|Biomedical Infomatics: A Partnership for UAB]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]] Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Lefkowitz-UAB_IT_Day_1110_13Sept2012.pdf&diff=4320File:Lefkowitz-UAB IT Day 1110 13Sept2012.pdf2012-10-23T20:53:18Z<p>Dls@uab.edu: Biomedical Infomatics</p>
<hr />
<div>Biomedical Infomatics</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43192012 Research Computing Day Agenda2012-10-23T20:51:58Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43182012 Research Computing Day Agenda2012-10-23T20:50:17Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:https://docs.uabgrid.uab.edu/w/images/a/a4/RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43172012 Research Computing Day Agenda2012-10-23T20:48:29Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: [[Media:RBM_research_computing_day2_9-13-12_13Sept2012.pdf|Building Capacity in Data Sciences]], Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:RBM_research_computing_day2_9-13-12_0900_13Sept2012.pdf&diff=4316File:RBM research computing day2 9-13-12 0900 13Sept2012.pdf2012-10-23T20:47:24Z<p>Dls@uab.edu: Building Capacity in Data Sciences</p>
<hr />
<div>Building Capacity in Data Sciences</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43152012 Research Computing Day Agenda2012-10-23T20:40:03Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 [[Media:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf|Research Computing Across the Tree of Life]], Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Thacker_UAB_ResCompDay_2012_1230_13Sept2012.pdf&diff=4314File:Thacker UAB ResCompDay 2012 1230 13Sept2012.pdf2012-10-23T20:38:51Z<p>Dls@uab.edu: Research Computing Across the Tree of Life</p>
<hr />
<div>Research Computing Across the Tree of Life</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43132012 Research Computing Day Agenda2012-10-23T20:38:06Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing_day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43122012 Research Computing Day Agenda2012-10-23T20:37:32Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 [[Media:Stoll_Research_computing-day_1530_13Sept2012.pdf|Exploration of the Microbiota in Inflammatory Diseases]], Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Stoll_Research_computing_day_1530_13Sept2012.pdf&diff=4311File:Stoll Research computing day 1530 13Sept2012.pdf2012-10-23T20:35:43Z<p>Dls@uab.edu: Exploration of the microbiota in inflammatory diseases</p>
<hr />
<div>Exploration of the microbiota in inflammatory diseases</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43102012 Research Computing Day Agenda2012-10-23T20:33:50Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 [[Media:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf|UAB IT 2012 Annual Report]], Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Research_Computing_Day_Doug_Rigney_0940_13Sept2012.pdf&diff=4309File:Research Computing Day Doug Rigney 0940 13Sept2012.pdf2012-10-23T20:32:40Z<p>Dls@uab.edu: Research Computing Day: Sept 13, 2012</p>
<hr />
<div>Research Computing Day: Sept 13, 2012</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43082012 Research Computing Day Agenda2012-10-23T20:31:15Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update_1010_13Sept2012.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Rcday2012-itrc-update_1010_13Sept2012.pdf&diff=4307File:Rcday2012-itrc-update 1010 13Sept2012.pdf2012-10-23T20:30:36Z<p>Dls@uab.edu: Research Computing Update, Sept 13, 2012 -- latest version</p>
<hr />
<div>Research Computing Update, Sept 13, 2012 -- latest version</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43062012 Research Computing Day Agenda2012-10-23T20:28:31Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 [[Media:NexGen_physics_1310_13Sept2012.pdf|Computational Model to the Simulation of Cardiac Electrical Wave Propagation]], LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:NexGen_physics_1310_13Sept2012.pdf&diff=4305File:NexGen physics 1310 13Sept2012.pdf2012-10-23T20:27:27Z<p>Dls@uab.edu: Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data</p>
<hr />
<div>Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43042012 Research Computing Day Agenda2012-10-23T20:24:15Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 [[Media:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf|Using UAB HPC Computing Resources for Next-Generation Sequence Analysis]], Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation,'' LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:UAB_Research_Day_Variant_Detection_NGS_1350_13Sept2012.pdf&diff=4303File:UAB Research Day Variant Detection NGS 1350 13Sept2012.pdf2012-10-23T20:22:33Z<p>Dls@uab.edu: UAB Research Computing Day Variant Detection NGS, 13:50, Sept 13, 2012</p>
<hr />
<div>UAB Research Computing Day Variant Detection NGS, 13:50, Sept 13, 2012</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43022012 Research Computing Day Agenda2012-10-23T20:20:56Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 ''Using UAB HPC Computing Resources for Next-Generation Sequence Analysis,'' Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation,'' LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 [[Media:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf|Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset]], Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Research_Computing_Day_Xujing_Wang_islet_oscillation_1510_13Sept2012.pdf&diff=4301File:Research Computing Day Xujing Wang islet oscillation 1510 13Sept2012.pdf2012-10-23T20:19:05Z<p>Dls@uab.edu: Numerical investigation of phase transition in a cellular network and disease onset</p>
<hr />
<div>Numerical investigation of phase transition in a cellular network and disease onset</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=43002012 Research Computing Day Agenda2012-10-23T20:17:20Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:Rcday2012-itrc-update.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 ''Using UAB HPC Computing Resources for Next-Generation Sequence Analysis,'' Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation,'' LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 ''Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset,'' Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Rcday2012-itrc-update.pdf&diff=4299File:Rcday2012-itrc-update.pdf2012-10-23T20:16:22Z<p>Dls@uab.edu: UAB Research Computing Update, September 13, 2012</p>
<hr />
<div>UAB Research Computing Update, September 13, 2012</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=42982012 Research Computing Day Agenda2012-10-23T20:15:16Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 [[Media:rcday2012-itrc-update.pdf|Update on UAB Research Computing]], John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 ''Using UAB HPC Computing Resources for Next-Generation Sequence Analysis,'' Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
<br />
* 2:10-2:30 Break <br />
<br />
<br />
* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation,'' LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 ''Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset,'' Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
<br />
* 4:10 Closing Remarks & Discussion</div>Dls@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=2012_Research_Computing_Day_Agenda&diff=42972012 Research Computing Day Agenda2012-10-23T20:13:41Z<p>Dls@uab.edu: </p>
<hr />
<div>'''AGENDA for UAB 2012 Research Computing Day'''<br />
<br />
September 13, 2012 <br />
<br />
UAB Hill University Center, Alumni Auditorium<br />
<br />
<br />
* 8:15-9:00 Registration & Continental Breakfast<br />
<br />
<br />
* 9:00-9:05 Welcome & Overview: David Shealy, Ph.D, IT Research Computing<br />
<br />
* 9:05-9:40 Keynote Address: ''Building Capacity in Data Sciences,'' Richard Marchase, Ph.D., Interim President<br />
* 9:40-10:10 ''UAB IT 2012 Annual Report,'' Doug Rigney, Ph.D., Interim VP Information Technology<br />
<br />
<br />
* 10:10-10:50 ''Update on UAB Research Computing,'' John-Paul Robinson, Bob Cloud, David Shealy, Ph.D.<br />
<br />
* 10:50-11:10 Break <br />
<br />
* 11:10-11:45 ''Using UAB HPC Computing Resources for Next-Generation Sequence Analysis,'' Elliot Lefkowitz, Ph.D., Curtis Hendrickson, Department of Microbiology<br />
<br />
<br />
* 11:45-12:30 Lunch <br />
<br />
<br />
* 12:30-2:00 '''Bioinformatics Session''' <br />
** 12:30-12:50 ''Research Computing Across the Tree of Life,'' Robert Thacker, Ph.D., Department of Biology<br />
** 12:50-1:10 [[Media:A_Clinical_Data_Warehouse_ResearchDay_1250_13Sept2013.pdf|A Clinical Data Warehouse?]] James Willig, MD, Department of Medicine, Infectious Diseases<br />
** 1:10-1:30 ''Computational Challenges in Storage, Analysis and Interpretation of Next-Generation Sequencing Data,'' Shouguo Gao, Ph.D., Department of Physics<br />
** 1:30-1:50 ''Microbiome Analysis,'' Ranjit Kumar, Ph.D., Center for Clinical & Translational Science<br />
** 1:50-2:10 ''Detecting Sequence Variation in Genomic Samples,'' Curtis Hendrickson, Ph.D., John Osborne, Department of Microbiology<br />
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* 2:10-2:30 Break <br />
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* 2:30-4:10 '''Science & Engineering Applications Session'''<br />
** 2:30-2:50 ''Computational Model to the Simulation of Cardiac Electrical Wave Propagation,'' LuFang Zhou, Ph.D., Division, Cardiovascular Disease; Department of Medicine; Department, Biomedical Engineering<br />
** 2:50-3:10 ''Diffusion of Odorants into the Binding Region of the Olfactory Receptor - a Novel Perspective,'' Peter Lai, Chiquito Crasto, Ph.D., Department of Genetics<br />
** 3:10-3:30 ''Numerical Investigation of Phase Transition in a Cellular Network and Disease Onset,'' Johanna Stamper, Ph.D., Xujing Wang, Ph.D., Serkan Guldal, Department of Physics, Elais Jackson, Computer & Information Sciences<br />
** 3:30-3:50 [[Media:Neuroimaging_Workflow_IT_Day_1530_13Sept2012.pdf|Increased Efficiency in NeuroImaging Workflow]], Frank Skidmore, MD, Department of Neurology<br />
** 3:50-4:10 ''Exploration of the Microbiota in Inflammatory Diseases,'' Matthew Stoll, MD, Department of Pediatric Rheumatology<br />
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* 4:10 Closing Remarks & Discussion</div>Dls@uab.edu