https://docs.uabgrid.uab.edu/w/api.php?action=feedcontributions&user=Demet%40uab.edu&feedformat=atomCheaha - User contributions [en]2024-03-28T19:01:14ZUser contributionsMediaWiki 1.38.2https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5272VisualBrainCore2016-09-19T16:57:32Z<p>Demet@uab.edu: /* UAB Neuroimaging Facilities */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: <br />
**'''Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).'''<br />
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
<br />
[[Civitan International Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5271VisualBrainCore2016-09-19T16:55:39Z<p>Demet@uab.edu: /* UAB Neuroimaging Facilities */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: <br />
**'''Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).'''<br />
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5270List of speakers in Visual Brain Core Seminar Series2016-09-19T16:54:37Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''December 2, 2016''': "TBA" Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison<br />
<br />
'''November 4, 2016''': "TBA" Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.<br />
<br />
'''October 7, 2016''': No seminar due to CCTS Retreat<br />
<br />
'''September 9, 2016''': "Measuring Human Melanopsin Function" Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5269List of speakers in Visual Brain Core Seminar Series2016-09-19T16:52:02Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
<br />
'''November 4, 2016''': "TBA" Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing<br />
<br />
'''October 7, 2016''': No seminar due to CCTS Retreat<br />
<br />
'''September 9, 2016''': "Measuring Human Melanopsin Function" Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5268List of speakers in Visual Brain Core Seminar Series2016-09-19T16:48:31Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''October 7, 2016''': No seminar due to CCTS Retreat<br />
<br />
'''September 9, 2016''': "Measuring Human Melanopsin Function" Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5267List of speakers in Visual Brain Core Seminar Series2016-09-19T16:42:45Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''September 9, 2016''': "Measuring Human Melanopsin Function" Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5266List of speakers in Visual Brain Core Seminar Series2016-09-19T16:42:28Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
'''September 9, 2016''': "Measuring Human Melanopsin Function" Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5178VisualBrainCore2016-05-31T19:47:19Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: <br />
**'''Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).'''<br />
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5177VisualBrainCore2016-05-31T19:46:48Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).<br />
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5176VisualBrainCore2016-05-31T19:46:14Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).<br />
** Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5175VisualBrainCore2016-05-31T19:45:28Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).<br />
**""Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5174VisualBrainCore2016-05-31T19:44:54Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]<br />
<br />
==Information For Visual Brain Core==<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
*Ravi Tripathi, MS: Computer Systems Specialist. Consultation on high performance computing and algorithm issues. <br />
**'''Office Hours: Monday, 10:00 am -2:00 pm, Lister Hill Library 4th Floor (Edge of Chaos, The Cafe).<br />
**""Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
===For Use in Grant Proposals:===<br />
The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].<br />
<br />
===VBC Mailing List:===<br />
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''<br />
<br />
===[[Other information]]===<br />
<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
(UAB folks, please let us know if your lab should be included on this list!)<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]<br />
<br />
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5173List of speakers in Visual Brain Core Seminar Series2016-05-19T16:11:36Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
''' July-No Seminar''': <br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5172List of speakers in Visual Brain Core Seminar Series2016-05-19T16:09:12Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''': "Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data", Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5170List of speakers in Visual Brain Core Seminar Series2016-04-21T16:08:42Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''': TBA<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': "Microstructural Modeling in Diffusion MRI", Kristi Klark, PhD, University of Southern California, Department of Neurology.<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5169List of speakers in Visual Brain Core Seminar Series2016-04-21T16:04:30Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''': TBA<br />
<br />
'''May 6, 2016''': "Project Quality Assessment Protocol- a resource for measuring the quality of MRI data", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': TBA<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5153List of speakers in Visual Brain Core Seminar Series2016-02-18T17:20:58Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''': TBA<br />
<br />
'''May 6, 2016''': TBA, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': TBA<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5152List of speakers in Visual Brain Core Seminar Series2016-02-18T17:20:27Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''':<br />
<br />
'''May 6, 2016''': TBA, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': TBA<br />
<br />
'''March 4, 2016''': "Using XNAT for neuroimaging data management, sharing, and analysis", Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5151List of speakers in Visual Brain Core Seminar Series2016-02-16T21:49:22Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.<br />
<br />
'''June 3, 2016''':<br />
<br />
'''May 6, 2016''': TBA, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': TBA<br />
<br />
'''March 4, 2016''': TBA<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5150List of speakers in Visual Brain Core Seminar Series2016-02-16T21:46:11Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''May 6, 2016''': "TBA", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
<br />
'''April 1, 2016''': TBA<br />
<br />
'''March 4, 2016''': TBA<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5149List of speakers in Visual Brain Core Seminar Series2016-02-16T21:45:48Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''May 6, 2016''': "TBA", Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research<br />
'''April 1, 2016''': TBA<br />
'''March 4, 2016''': TBA<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5145List of speakers in Visual Brain Core Seminar Series2016-02-04T15:17:53Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''February 5, 2016''': "The future of fMRI in Cognitive Neuroscience", Russel Poldrack, PhD, Stanford University, Department of Psychology.<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval", Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience", Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5144List of speakers in Visual Brain Core Seminar Series2016-02-04T15:15:19Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''December 4, 2015''': "Age Differences in Brain Functioning During Memory Formation and Retrieval" , Ian M. McDonough, University of Alabama, Department of Psychology.<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience" , Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5143List of speakers in Visual Brain Core Seminar Series2016-02-04T15:10:44Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''November 6, 2015''': "Contributions and Challenges for Network Models in Cognitive Neuroscience" , Paper Discussion, presentation by Jarrod Hicks.<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5047List of speakers in Visual Brain Core Seminar Series2015-08-13T16:43:35Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
'''October 2, 2015''': "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5046List of speakers in Visual Brain Core Seminar Series2015-08-13T16:43:00Z<p>Demet@uab.edu: </p>
<hr />
<div>(from newest to oldest)<br />
<br />
""October 2, 2015"": "Resting State Functional Connectivity: Methods, Debates and Clinical Applications" Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)<br />
<br />
'''August 7, 2015''': "Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation" Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology<br />
<br />
'''June 5, 2015''': "Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''May 1, 2015''': "13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5015List of speakers in Visual Brain Core Seminar Series2015-05-14T16:49:36Z<p>Demet@uab.edu: </p>
<hr />
<div>'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': " 13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''June 5, 2015''': " Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''<br />
<br />
'''August 7, 2015''': TBA</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5014List of speakers in Visual Brain Core Seminar Series2015-05-14T16:48:09Z<p>Demet@uab.edu: </p>
<hr />
<div>'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': " 13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.<br />
<br />
'''June 5, 2015''': " Which fMRI Analysis Software?" Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&diff=5013List of speakers in Visual Brain Core Seminar Series2015-05-14T16:43:43Z<p>Demet@uab.edu: </p>
<hr />
<div>'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': " 13C MRS Studies of Brain Metabolism of Alcohol and Acetate" Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Civitan_Functional_Neuroimaging_Laboratory&diff=5004Civitan Functional Neuroimaging Laboratory2015-03-10T21:41:45Z<p>Demet@uab.edu: </p>
<hr />
<div> <br />
'''Director: Mark Bolding, PhD'''<br />
<br />
'''e-mail: mbolding@uab.edu'''<br />
<br />
The Civitan Functional Neuroimaging Laboratory (CFNL) is located on the first floor of the Civitan International Research Center at the University of Alabama at Birmingham. It houses a research dedicated Siemens Allegra 3T head-only scanner for structural and functional brain imaging, an MRI preparation room for pre- and post-scan patient monitoring, and a fully-equipped experimental suite for behavioral recording.<br />
<br />
Single and 4 channel TR head coils are available for use with the Siemens Allegra 3T scanner. Standard Siemens pulse sequences are used in general although some have been modified for research purposes. Triggering signals are available for investigators to synchronize stimulus presentation and behavioral monitoring with scans.<br />
<br />
The CFNL is equipped with an IFIS-SA system for audio/visual stimulation. Visual stimulus presentation can be delivered using an advanced fiber optic system (IFIS-SA) or using back-projection with an LCD projector and a screen at the end of the patient table.<br />
<br />
Auditory stimuli are presented using a pneumatic headphone system (IFIS-SA). Behavioral measurement can be accomplished using IFIS-SA button response units or fORP joystick and button boxes. Cardiac and respiratory functions can be monitored using an Invivo remote physiological monitoring system. In addition, Eyelink equipment and software is available for eyetracking during scanning.<br />
<br />
Scans available: Functional (BOLD) MRI, Diffusion Tensor Imaging, Magnetic Resonance Spectroscopy, as well as other traditional T1 and T2-weighted structural scans.<br />
<br />
Equipment<br />
3T Siemens Allegra MRI scanner <br />
<br />
Center Affiliation<br />
Civitan International Research Center<br />
<br />
Serving - UAB Internal and External</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=Civitan_Functional_Neuroimaging_Laboratory&diff=5003Civitan Functional Neuroimaging Laboratory2015-03-10T21:39:12Z<p>Demet@uab.edu: Created page with "Director: Mark Bolding, PhD e-mail: mbolding@uab.edu The Civitan Functional Neuroimaging Laboratory (CFNL) is located on the first floor of the Civitan International Researc..."</p>
<hr />
<div>Director: Mark Bolding, PhD<br />
<br />
e-mail: mbolding@uab.edu<br />
<br />
The Civitan Functional Neuroimaging Laboratory (CFNL) is located on the first floor of the Civitan International Research Center at the University of Alabama at Birmingham. It houses a research dedicated Siemens Allegra 3T head-only scanner for structural and functional brain imaging, an MRI preparation room for pre- and post-scan patient monitoring, and a fully-equipped experimental suite for behavioral recording.<br />
<br />
Single and 4 channel TR head coils are available for use with the Siemens Allegra 3T scanner. Standard Siemens pulse sequences are used in general although some have been modified for research purposes. Triggering signals are available for investigators to synchronize stimulus presentation and behavioral monitoring with scans.<br />
<br />
The CFNL is equipped with an IFIS-SA system for audio/visual stimulation. Visual stimulus presentation can be delivered using an advanced fiber optic system (IFIS-SA) or using back-projection with an LCD projector and a screen at the end of the patient table.<br />
<br />
Auditory stimuli are presented using a pneumatic headphone system (IFIS-SA). Behavioral measurement can be accomplished using IFIS-SA button response units or fORP joystick and button boxes. Cardiac and respiratory functions can be monitored using an Invivo remote physiological monitoring system. In addition, Eyelink equipment and software is available for eyetracking during scanning.<br />
<br />
Scans available: Functional (BOLD) MRI, Diffusion Tensor Imaging, Magnetic Resonance Spectroscopy, as well as other traditional T1 and T2-weighted structural scans.<br />
<br />
Equipment<br />
3T Siemens Allegra MRI scanner <br />
<br />
Center Affiliation<br />
Civitan International Research Center<br />
<br />
Serving - UAB Internal and External</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5002VisualBrainCore2015-03-10T21:38:44Z<p>Demet@uab.edu: /* UAB Neuroimaging Facilities */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': TBA<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5001VisualBrainCore2015-03-10T21:38:01Z<p>Demet@uab.edu: /* UAB Neuroimaging Facilities */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': TBA<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
Director: Mark Bolding, PhD<br />
<br />
e-mail: mbolding@uab.edu<br />
<br />
The Civitan Functional Neuroimaging Laboratory (CFNL) is located on the first floor of the Civitan International Research Center at the University of Alabama at Birmingham. It houses a research dedicated Siemens Allegra 3T head-only scanner for structural and functional brain imaging, an MRI preparation room for pre- and post-scan patient monitoring, and a fully-equipped experimental suite for behavioral recording.<br />
<br />
Single and 4 channel TR head coils are available for use with the Siemens Allegra 3T scanner. Standard Siemens pulse sequences are used in general although some have been modified for research purposes. Triggering signals are available for investigators to synchronize stimulus presentation and behavioral monitoring with scans.<br />
<br />
The CFNL is equipped with an IFIS-SA system for audio/visual stimulation. Visual stimulus presentation can be delivered using an advanced fiber optic system (IFIS-SA) or using back-projection with an LCD projector and a screen at the end of the patient table.<br />
<br />
Auditory stimuli are presented using a pneumatic headphone system (IFIS-SA). Behavioral measurement can be accomplished using IFIS-SA button response units or fORP joystick and button boxes. Cardiac and respiratory functions can be monitored using an Invivo remote physiological monitoring system. In addition, Eyelink equipment and software is available for eyetracking during scanning.<br />
<br />
Scans available: Functional (BOLD) MRI, Diffusion Tensor Imaging, Magnetic Resonance Spectroscopy, as well as other traditional T1 and T2-weighted structural scans.<br />
<br />
Equipment<br />
3T Siemens Allegra MRI scanner <br />
<br />
Center Affiliation<br />
Civitan International Research Center<br />
<br />
Serving - UAB Internal and External<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=5000VisualBrainCore2015-03-10T21:37:06Z<p>Demet@uab.edu: /* UAB Neuroimaging Facilities */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': TBA<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
Director: Mark Bolding, PhD<br />
e-mail: mbolding@uab.edu<br />
<br />
The Civitan Functional Neuroimaging Laboratory (CFNL) is located on the first floor of the Civitan International Research Center at the University of Alabama at Birmingham. It houses a research dedicated Siemens Allegra 3T head-only scanner for structural and functional brain imaging, an MRI preparation room for pre- and post-scan patient monitoring, and a fully-equipped experimental suite for behavioral recording.<br />
<br />
Single and 4 channel TR head coils are available for use with the Siemens Allegra 3T scanner. Standard Siemens pulse sequences are used in general although some have been modified for research purposes. Triggering signals are available for investigators to synchronize stimulus presentation and behavioral monitoring with scans.<br />
<br />
The CFNL is equipped with an IFIS-SA system for audio/visual stimulation. Visual stimulus presentation can be delivered using an advanced fiber optic system (IFIS-SA) or using back-projection with an LCD projector and a screen at the end of the patient table.<br />
<br />
Auditory stimuli are presented using a pneumatic headphone system (IFIS-SA). Behavioral measurement can be accomplished using IFIS-SA button response units or fORP joystick and button boxes. Cardiac and respiratory functions can be monitored using an Invivo remote physiological monitoring system. In addition, Eyelink equipment and software is available for eyetracking during scanning.<br />
<br />
Scans available: Functional (BOLD) MRI, Diffusion Tensor Imaging, Magnetic Resonance Spectroscopy, as well as other traditional T1 and T2-weighted structural scans.<br />
<br />
Equipment<br />
3T Siemens Allegra MRI scanner <br />
<br />
Center Affiliation<br />
Civitan International Research Center<br />
<br />
Serving - UAB Internal and External<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4999VisualBrainCore2015-03-10T21:33:59Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
<br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': TBA<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4998VisualBrainCore2015-03-10T21:33:29Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
'''May 1, 2015''': TBA<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4997VisualBrainCore2015-03-10T21:32:07Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': "How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': "Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us" Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4996VisualBrainCore2015-03-10T21:28:39Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': How do we measure functional connectivity? An interactive discussion of functional connectivity methods" Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham<br />
<br />
[[Future Seminars]]<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=File:Core.png&diff=4989File:Core.png2015-02-17T19:47:14Z<p>Demet@uab.edu: Demet@uab.edu uploaded a new version of &quot;File:Core.png&quot;</p>
<hr />
<div></div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4988VisualBrainCore2015-02-17T19:35:07Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every first Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4987VisualBrainCore2015-01-29T15:57:02Z<p>Demet@uab.edu: /* fMRI related how-to's and important links */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster<br />
* [[Cheaha]] - background information on the cluster useful for grants and publications<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4985VisualBrainCore2015-01-29T15:55:36Z<p>Demet@uab.edu: /* High Performance Computing at UAB */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===Cluster Computing Environment at UAB: Cheaha===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4984VisualBrainCore2015-01-29T15:53:17Z<p>Demet@uab.edu: /* High Performance Computing at UAB */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
====Cluster Computing Environment at UAB: Cheaha====<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4983VisualBrainCore2015-01-29T15:51:47Z<p>Demet@uab.edu: /* High Performance Computing at UAB */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
====Cluster Computing Environment at UAB====<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4982VisualBrainCore2015-01-29T15:49:14Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4981VisualBrainCore2015-01-29T15:48:59Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm,' Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4980VisualBrainCore2015-01-29T15:44:37Z<p>Demet@uab.edu: /* Visual Brain Core Personnel and Office Hours */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**'''Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm,''' <br />
'''Civitan International Research Center, Room 235C'''<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4978VisualBrainCore2015-01-27T20:31:10Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4977VisualBrainCore2015-01-27T20:30:55Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Nov 21, 2014''': "White Matter in the Older Brain is More Plastic than in the Younger Brain" Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological <br />
Sciences, Brown University.<br />
<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.eduhttps://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&diff=4963VisualBrainCore2015-01-22T17:53:44Z<p>Demet@uab.edu: /* Visual Brain Core Seminar Series */</p>
<hr />
<div>[[File:Core.png|thumb|500px]]<br />
<br />
==Visual Brain Core Mission==<br />
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.<br />
<br />
[[The 5 aims of the Visual Brain Core]]<br />
<br />
==Information For Visual Brain Core==<br />
===For Use in Grant Proposals:===<br />
[[personnel resources]]<br />
<br />
[[computing resources]]<br />
<br />
===Visual Brain Core Personnel and Office Hours===<br />
<br />
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. <br />
**Office Hours: Tuesday, 2:00 -5:00 pm, Thursday, 9:00 am-12:00 pm<br />
<br />
We are hiring a [[Computer Systems Specialist]], in conjunction with Research computing.<br />
<br />
===Visual Brain Core Seminar Series===<br />
Every third Friday, 3:30 PM in CIRC 120. <br />
We will discuss new ideas and techniques in brain imaging. <br />
[[List of speakers in Visual Brain Core Seminar Series]]<br />
<br />
[[Past Seminars]]<br />
<br />
'''Jan 9, 2014''' : "UAB Research Computing Resources for Neuroimaging Research" Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony<br />
<br />
[[Future Seminars]]<br />
<br />
'''Feb 6, 2015''': "High Gradient Diffusion MRI from the Human Connectome Project" Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.<br />
<br />
'''March 6, 2015''': TBA<br />
<br />
'''April 3, 2015''': Title: TBA, Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.<br />
<br />
===Other information===<br />
[[Protocols in the scanner:]]<br />
<br />
[[Info about specific processing pipelines implemented on Cheaha]]<br />
<br />
[[Info about backup resources]]<br />
<br />
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.<br />
<br />
==Neuroimaging at UAB==<br />
<br />
===UAB Neuroimaging Facilities===<br />
<br />
[[Civitan Functional Neuroimaging Laboratory]]<br />
<br />
[[UAB-HSF MEG Laboratory]]<br />
<br />
[[Small Animal Imaging Shared Facility]]<br />
<br />
Equipment for collecting behavioral data during Neuroimaging<br />
<br />
*[http://www.sr-research.com/EL_1000.html Eye Tracker]<br />
<br />
===Neuroimaging and Systems Neuroscience Labs at UAB===<br />
<br />
*[http://www.markbolding.com/ Bolding Lab]<br />
<br />
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]<br />
<br />
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]<br />
<br />
*[http://labs.uab.edu/kwon/ Kwon Lab]<br />
<br />
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]<br />
<br />
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]<br />
<br />
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab]<br />
<br />
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Labarotary]<br />
<br />
===High Performance Computing at UAB===<br />
[[Cheaha]]<br />
<br />
===UAB-Auburn University Collaboration for Neuroimaging===<br />
<br />
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''<br />
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''<br />
<br />
'''UAB & Auburn Neuroimaging Journal Club'''<br />
<br />
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti@uab.edu<br />
<br />
'''[[UAB & Auburn Neuroimaging Retreat]]'''<br />
<br />
[[Photos]]<br />
<br />
==How To...==<br />
<br />
===Computer and coding related how-to's===<br />
<br />
[[Using Linux]]<br />
<br />
[[Matlab]]<br />
<br />
[[Psychtoolbox]]<br />
<br />
[[Coding Help]]<br />
<br />
*[[Unix shortcuts]]<br />
*[[Eye Tracker]]<br />
<br />
===fMRI related how-to's and important links===<br />
<br />
[[General Information]]<br />
[[Tools]]<br />
<br />
[[Brain atlases]]<br />
<br />
[[Cool Websites for Beginners]]<br />
<br />
[[fMRI statistics]]<br />
<br />
===UAB Neuroimaging Tools and How-To's (requires blazer id)===<br />
<br />
[[Imaging Protocols]]<br />
<br />
[[Analysis Scripts]]<br />
<br />
[[Behavioral data analysis techniques]]<br />
<br />
[[Institutional Review Board]]</div>Demet@uab.edu