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	<id>https://docs.uabgrid.uab.edu/w/api.php?action=feedcontributions&amp;feedformat=atom&amp;user=Kmv%40uab.edu</id>
	<title>Cheaha - User contributions [en]</title>
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	<updated>2026-04-12T16:44:15Z</updated>
	<subtitle>User contributions</subtitle>
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		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5895</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5895"/>
		<updated>2019-03-13T21:10:48Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: Undo revision 5845 by Ravi89@uab.edu (talk)&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every second Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging.  During other fridays at noon in CIRC 120, we have Neuroimaging Journal Club.&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. &lt;br /&gt;
Information about this colloquium is here: [https://www.uab.edu/medicine/cinl/seminars CINL page ].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series Older website for speakers]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
Please follow these instructions to subscribe to the ‘CINL-NOTICE’  listserv:&lt;br /&gt;
 &lt;br /&gt;
Click here, or alternatively, send an email to listserv@listserv.uab.edu with the email body as sub cinl-notice.&lt;br /&gt;
After which you’ll receive an email to confirm your email address.&lt;br /&gt;
 &lt;br /&gt;
After confirming your email address, you would start receiving cancellation emails from others on the list as well as be able to send your own notifications .&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium&lt;br /&gt;
[https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5822</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5822"/>
		<updated>2018-09-04T16:02:48Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* Mailing List: */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every second Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging.  During other fridays at noon in CIRC 120, we have Neuroimaging Journal Club.&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. &lt;br /&gt;
Information about this colloquium is here: [https://www.uab.edu/medicine/cinl/seminars CINL page ].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series Older website for speakers]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
Please follow these instructions to subscribe to the ‘CINL-NOTICE’  listserv:&lt;br /&gt;
 &lt;br /&gt;
Click here, or alternatively, send an email to listserv@listserv.uab.edu with the email body as sub cinl-notice.&lt;br /&gt;
After which you’ll receive an email to confirm your email address.&lt;br /&gt;
 &lt;br /&gt;
After confirming your email address, you would start receiving cancellation emails from others on the list as well as be able to send your own notifications .&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium&lt;br /&gt;
[https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5812</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5812"/>
		<updated>2018-08-18T02:18:57Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* CINL Brain Core Seminar Series and Neuroimaging Journal Club */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every second Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging.  During other fridays at noon in CIRC 120, we have Neuroimaging Journal Club.&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community. &lt;br /&gt;
Information about this colloquium is here: [https://www.uab.edu/medicine/cinl/seminars CINL page ].&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series Older website for speakers]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium&lt;br /&gt;
[https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5811</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5811"/>
		<updated>2018-08-18T02:16:16Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
[http://www.alabamaadvancedimaging.org/ Alabama Advanced Imaging Consortium&lt;br /&gt;
[https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5810</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5810"/>
		<updated>2018-08-18T02:14:21Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the [https://www.uab.edu/medicine/cinl Civitan International Neuroimaging Laboratory]. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5809</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5809"/>
		<updated>2018-08-18T02:12:58Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* CINL Brain Core Personnel and Office Hours */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - noon, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
** '''Thursday, 10:00 am - noon, Edge of Chaos in Lister Hill Library.'''&lt;br /&gt;
*Mark Bolding, Ph.D. will discuss MR physics related questions.  Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues.&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5808</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5808"/>
		<updated>2018-08-18T02:11:21Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* Neuroimaging and Systems Neuroscience Labs at UAB */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor outside room 210.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/cinl/about/researchers a partial list of researchers who use the CINL]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5729</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5729"/>
		<updated>2018-04-30T22:22:35Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Previous talks from newest to oldest for the Brain Core Seminar Series from the Civitan International Neuroimaging Labs.  &lt;br /&gt;
Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.&lt;br /&gt;
&lt;br /&gt;
'''April 13, 2018''': “New methods for mediation and moderation analysis”  Martin Lindquist, Ph.D., Johns Hopkins&lt;br /&gt;
&lt;br /&gt;
'''March 2, 2018''':  Computer science + Neuroscience: Opportunities for collaboration&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2018''': &amp;quot;An unfortunate number of things indexed by head motion&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Clark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club.  Together these meet every Friday at noon in CIRC 120.  Usually, we have pizza.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5717</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5717"/>
		<updated>2018-02-27T21:41:28Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Previous talks from newest to oldest for the Brain Core Seminar Series from the Civitan International Neuroimaging Labs.  &lt;br /&gt;
Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;An unfortunate number of things indexed by head motion&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Clark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club.  Together these meet every Friday at noon in CIRC 120.  Usually, we have pizza.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5710</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5710"/>
		<updated>2018-01-09T00:10:12Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Previous talks from newest to oldest for the Brain Core Seminar Series from the Civitan International Neuroimaging Labs.  &lt;br /&gt;
Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;TBA&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Clark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club.  Together these meet every Friday at noon in CIRC 120.  Usually, we have pizza.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5709</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5709"/>
		<updated>2018-01-08T21:39:26Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Previous talks from newest to oldest for the Brain Core Seminar Series from the Civitan International Neuroimaging Labs.  &lt;br /&gt;
Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.)&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;TBA&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Clark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[[Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club.  Together these meet every Friday at noon in CIRC 120.  Usually, we have pizza.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5708</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5708"/>
		<updated>2018-01-08T21:33:26Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Previous talks from newest to oldest for the Brain Core Seminar Series from the Civitan International Neuroimaging Labs.  &lt;br /&gt;
Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.)&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;TBA&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[[Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club.  Together these meet every Friday at noon in CIRC 120.  Usually, we have pizza.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5707</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5707"/>
		<updated>2018-01-08T21:31:52Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest.  Meetings are at noon on the second Friday of the month in Civitan International Research Center room 120.)&lt;br /&gt;
&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;TBA&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5706</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5706"/>
		<updated>2018-01-08T21:30:48Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
'''Feb 9, 2017''': &amp;quot;TBA&amp;quot; Jonathan Power, MD, PhD, Weill Cornell Medical School &lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5705</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5705"/>
		<updated>2018-01-05T05:07:42Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&amp;lt;!-- this link does not have  much in it&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
--&amp;gt;&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.danmirman.org/ Mirman Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Other_information&amp;diff=5704</id>
		<title>Other information</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Other_information&amp;diff=5704"/>
		<updated>2018-01-05T05:06:34Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[Protocols in the scanner:]]&lt;br /&gt;
&lt;br /&gt;
[[Info about specific processing pipelines implemented on Cheaha]]&lt;br /&gt;
&lt;br /&gt;
[[Info about backup resources]]&lt;br /&gt;
&lt;br /&gt;
[[Links to info]] about certain most used protocols and software downloads and mailing lists for different software.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5703</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5703"/>
		<updated>2018-01-05T05:05:51Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* UAB Neuroimaging Facilities */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory Civitan International Neuroimaging Laboratory ] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.danmirman.org/ Mirman Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5702</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5702"/>
		<updated>2018-01-05T05:05:29Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* UAB Neuroimaging Facilities */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;!-- need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[Civitan International Neuroimaging Laboratory https://www.uab.edu/medicine/circ/neuroimaging/137-neuroimaging/270-civitan-international-neuroimaging-laboratory] &lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.danmirman.org/ Mirman Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5701</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5701"/>
		<updated>2018-01-05T05:02:24Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;--! need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[Civitan International Neuroimaging Laboratory] &amp;lt;&amp;lt;&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.danmirman.org/ Mirman Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (some require blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5700</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5700"/>
		<updated>2018-01-05T04:59:12Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&amp;lt;--! need to add good links to here --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
[Civitan International Neuroimaging Laboratory] &amp;lt;&amp;lt;&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&amp;lt;!-- the following is outdated and could be improved &lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker] --&amp;gt;&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5699</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5699"/>
		<updated>2018-01-05T04:52:31Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5698</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5698"/>
		<updated>2018-01-05T04:51:25Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Colloquium'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Shared across campuses via GoToMeeting.  &lt;br /&gt;
To get on our mailing list, [https://docs.google.com/forms/d/e/1FAIpQLSdNi8bGzhQleGUg5h3hLZtXTDL-vAJMyf-n5W6i_ohdedISbw/viewform click here]&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5697</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5697"/>
		<updated>2018-01-05T04:49:06Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/List_of_speakers_in_Visual_Brain_Core_Seminar_Series List of speakers in Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=The_5_aims_of_the_Visual_Brain_Core&amp;diff=5696</id>
		<title>The 5 aims of the Visual Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=The_5_aims_of_the_Visual_Brain_Core&amp;diff=5696"/>
		<updated>2018-01-05T04:46:40Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;The study of vision and visual plasticity using a human model requires expertise from multiple domains, from recruitment and dealing with patients and participants, to writing sophisticated computer code for analysis of functional MRI data.   The visual brain core will facilitate research in 5 ways:&lt;br /&gt;
&lt;br /&gt;
1.	The core will facilitate interactions among investigators through a regularly scheduled “methods” workshop, centered around the development and implementation of state-of-the-art methods for analysis of brain data. &lt;br /&gt;
&lt;br /&gt;
2.	Help set up project workflows to efficiently process data. To do this, the core will help labs develop a coherent framework for computing resources, storage,  and backup for the large datasets required by neuroimaging studies and help provide computer systems support.&lt;br /&gt;
&lt;br /&gt;
3.	Investigators will have access to an imaging researcher for assistance developing and learning complex data analysis tools used in the analysis of high dimensional, large-scale vision and brain datasets, and designing appropriate analysis protocols.  This researcher will not perform your data analysis, but will consult with you about how to implement the analysis and experiment.&lt;br /&gt;
&lt;br /&gt;
4.  An efficient and accessible system for investigators will be set up to recruit and retain participants for visual neuroscience research, including persons with specific disorders impacting vision and those in normal health. &lt;br /&gt;
&lt;br /&gt;
5.	Visual Brain Core will purchase equipment to generate visual displays allowing defined and controlled stimulus characteristics for studies for use in functional MRI experiments.&lt;br /&gt;
&lt;br /&gt;
Our goal is to create a sustainable resource for facilitating research into the visual brain.  As such, we ask that all users of the resource include some percentage of support for core resources in their grant proposals.  Without consistent support of this type, the core will not be able to be maintained.  Please see our website for information you can cut and paste into your grant application regarding the components of the visual brain core.  Also, please cite the Visual Brain Core when publishing work based on help from the core.  The correct citation in published work is “This work was supported by a grant from the General Endowment Fund of the University of Alabama Health Services Foundation.”&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5695</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5695"/>
		<updated>2018-01-05T04:45:58Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/The_5_aims_of_the_Visual_Brain_Core The 5 aims of the Brain Core]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5694</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5694"/>
		<updated>2018-01-05T04:41:54Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5693</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5693"/>
		<updated>2018-01-05T04:41:33Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined Brain Core seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/Brain_Core back to Brain Core page]&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5692</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5692"/>
		<updated>2018-01-05T04:40:54Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined VBC seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''December 15, 2017''': &amp;quot;Stimulus Locked Network Dynamics&amp;quot; Chris Honey, PhD, Johns Hopkins University&lt;br /&gt;
&lt;br /&gt;
'''October 13, 2017''': &amp;quot;CMEG in epilepsy care: Current applications and the need for innovation&amp;quot; Ismail Mohamed, M.D., FAAP, FRCPC, UAB&lt;br /&gt;
&lt;br /&gt;
'''September 8, 2017''': &amp;quot;Corrections for multiple comparisons in voxel-based lesion-symptom mapping&amp;quot; Daniel Mirman, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''June 9, 2017''': Hyemin Han, PhD, University of Alabama, Tuscaloosa&lt;br /&gt;
&lt;br /&gt;
'''May 12, 2017''': &amp;quot;Threats to Valid Inference in fMRI&amp;quot; Tal Yarkoni, PhD, University of Texas at Austin&lt;br /&gt;
&lt;br /&gt;
'''April 14, 2017''': &amp;quot;Stress reactivity in patients with psychogenic nonepileptic seizures&amp;quot; Jane Allendorfer, PhD, UAB&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Brain Core page]&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5691</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5691"/>
		<updated>2018-01-05T04:33:05Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory. The original &amp;quot;Visual Brain Core&amp;quot; was made possible by a generous grant from UAB's HSF/GEF grant program. Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name. Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5690</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5690"/>
		<updated>2018-01-05T04:32:41Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Our website has changed slightly to reflect our new name.  The original Visual Brain Core was made possible by a generous grant from UAB's HSF/GEF grant program.  Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name.  Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
Our new website is here: [https://docs.uabgrid.uab.edu/wiki/Brain_Core https://docs.uabgrid.uab.edu/wiki/Brain_Core]&lt;br /&gt;
&lt;br /&gt;
[[File:Core.png|thumb|500px]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5689</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5689"/>
		<updated>2018-01-05T04:30:44Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Our website has changed slightly to reflect our new name.  The original Visual Brain Core was made possible by a generous grant from UAB's HSF/GEF grant progam.  Given that our resources ended up being used by a broader base of users than just vision researchers, we've dropped the &amp;quot;visual&amp;quot; from our name.  Also, we're continuing our work in collaboration with UAB's Civitan International Neuroimaging Lab, and so we're officially the CINL Brain Core now.&lt;br /&gt;
&lt;br /&gt;
Our new website is here: [https://docs.uabgrid.uab.edu/wiki/Brain_Core https://docs.uabgrid.uab.edu/wiki/Brain_Core]&lt;br /&gt;
&lt;br /&gt;
[[File:Core.png|thumb|500px]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5688</id>
		<title>Brain Core</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Brain_Core&amp;diff=5688"/>
		<updated>2018-01-05T04:16:22Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: Created page with &amp;quot;500px  ==CINL Brain Core Mission== CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory.  Our mission is to help produce high...&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
&lt;br /&gt;
==CINL Brain Core Mission==&lt;br /&gt;
CINL Brain Core is an arm of the Civitan International Neuroimaging Laboratory.  Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5687</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5687"/>
		<updated>2018-01-05T04:11:05Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined VBC seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Brain Core page]&lt;br /&gt;
[[Brain Core]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5686</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5686"/>
		<updated>2018-01-04T18:48:25Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined VBC seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5685</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5685"/>
		<updated>2018-01-04T18:47:49Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* Information For CINL Brain Core */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
&lt;br /&gt;
==Visual Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Visual Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For CINL Brain Core==&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am - 1:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 10:00 am - 1:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===CINL Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The CINL Brain Core is supported by users.  For this reason, we ask that you include use of the Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5588</id>
		<title>Grant Proposal Language</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5588"/>
		<updated>2017-09-21T18:39:49Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* MRI facility resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Quotations from previous proposals using CINL resources are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
In addition to expertise available within the lab, we will also make use of UAB’s Visual Brain Core, which provides development and help with neuroimaging tools (docs.uabgrid.uab.edu/wiki/VisualBrainCore).  Access to computing infrastructure (192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network) and supplemental data analysis help (a masters level computing systems administrator and PhD-level algorithms specialist) will ensure the accuracy and validity of the analysis methods planned above, but will also ensure that methods that may arise during the grant period can be applied to the analyses of our data.&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;br /&gt;
&lt;br /&gt;
==Quality Assurance for MRI==&lt;br /&gt;
Periodic QA assessments are performed on the UAB Prisma 3T MRI system.&lt;br /&gt;
A standard spherical agar phantom is scanned weekly using the fMRI quality assurance methodology described by Friedman &amp;amp; Glover (1).  Four quantitative measures of SNR, signal fluctuation, and signal drift are calculated and graphed on a website available to all facility users.  Values which differ from measured historical means by more than 2 standard deviations are flagged and investigated by lab personnel and referred to MRI system manufacturer service engineers as needed.&lt;br /&gt;
An American College of Radiology (ACR) large MRI geometry phantom is scanned every two weeks.  Seven quantitative parameters are measured: geometric accuracy, high-contrast spatial resolution, slice thickness accuracy, slice position accuracy, image intensity uniformity, percent-signal ghosting, and low-contrast object detectability.  These values are given on a website that is available to all facility users.  Values which differ from measured historical means by more than 2 standard deviations are flagged and investigated by lab personnel and referred to MRI system manufacturer service engineers as needed.  &lt;br /&gt;
When QA procedures are flagged by lab personnel, users will be notified so that they can make note of anomalies that may affect their data.  &lt;br /&gt;
&lt;br /&gt;
 Friedman, L. and Glover, G. H. (2006), Report on a multicenter fMRI quality assurance protocol. J. Magn. Reson. Imaging, 23: 827–839. doi:10.1002/jmri.20583&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
An example budget justification from a previous grant:&lt;br /&gt;
&lt;br /&gt;
'''NAME HERE, Postdoctoral Researcher/ Analyst (1.2 months)''' A high level researcher  will be needed to assist with programming data analysis and stimulus presentation scripts, as well as with overseeing our data backup system.  Dr. NAMEis an experienced programmer for fMRI data analysis, and holds a position shared among several labs within the UAB neuroimaging community, as part of the Visual Brain Core (see docs.uabgrid.uab.edu/wiki/VisualBrainCore).  She will devote 1.2 calendar months to this project.&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
The following is one way to describe the available computing resources in a proposal.  As a VBC user, if you've written a proposal that describes this better, please add that language to this page.&lt;br /&gt;
&lt;br /&gt;
--&lt;br /&gt;
&lt;br /&gt;
High performance Computing Cluster (Cheaha): &lt;br /&gt;
&lt;br /&gt;
Neuroimaging datasets are large and modern analysis techniques require state-of-the-art processing capabilities.  UAB's High Performance Computing cluster has the capability to perform the complex processing we propose here.  **The following section contains older information -- you may want to refer to the cheaha site for the most up-to-date specs on the system. UAB IT Research Computing maintains high performance compute and storage resources for investigators. The Cheaha compute cluster includes 192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network. A high-performance, 180TB Lustre parallel file system built on a Direct Data Network (DDN) hardware platform is also connected to these cores via the Infiniband fabric. An additional 20TB of traditional SAN storage is available via a 1GigE network fabric. This general access compute fabric is available to all UAB investigators.&lt;br /&gt;
Additionally, NIH funded investigators are granted priority access to the NIH SIG award acquired compute and storage pool that includes an additional 576 2.66GHz Intel-based compute cores, 2.3TB RAM and 180TB in the high-performance Lustre parallel file system all interconnected via a QDR Infiniband network fabric.**   Our research group has been working with UAB IT research computing to develop an efficient workflow for neuroimaging using the Cheaha system.  Support for this work is provided in part through the Visual Brain Core at UAB (https://docs.uabgrid.uab.edu/wiki/VisualBrainCore).  &lt;br /&gt;
More information about Cheaha is available at: docs.uabgrid.uab.edu/wiki/Cheaha &lt;br /&gt;
&lt;br /&gt;
Location: Rust Building, accessible remotely&lt;br /&gt;
&lt;br /&gt;
==back to VBC page==&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5574</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5574"/>
		<updated>2017-05-31T22:56:06Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* Information For Visual Brain Core */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
&lt;br /&gt;
==Visual Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Visual Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For Visual Brain Core==&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am -2:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Visual Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The Visual Brain Core must be eventually supported by users.  For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===VBC Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5573</id>
		<title>Grant Proposal Language</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5573"/>
		<updated>2017-05-31T22:51:28Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* computing resources */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Quotations from previous proposals using CINL resources are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
In addition to expertise available within the lab, we will also make use of UAB’s Visual Brain Core, which provides development and help with neuroimaging tools (docs.uabgrid.uab.edu/wiki/VisualBrainCore).  Access to computing infrastructure (192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network) and supplemental data analysis help (a masters level computing systems administrator and PhD-level algorithms specialist) will ensure the accuracy and validity of the analysis methods planned above, but will also ensure that methods that may arise during the grant period can be applied to the analyses of our data.&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
An example budget justification from a previous grant:&lt;br /&gt;
&lt;br /&gt;
'''NAME HERE, Postdoctoral Researcher/ Analyst (1.2 months)''' A high level researcher  will be needed to assist with programming data analysis and stimulus presentation scripts, as well as with overseeing our data backup system.  Dr. NAMEis an experienced programmer for fMRI data analysis, and holds a position shared among several labs within the UAB neuroimaging community, as part of the Visual Brain Core (see docs.uabgrid.uab.edu/wiki/VisualBrainCore).  She will devote 1.2 calendar months to this project.&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
The following is one way to describe the available computing resources in a proposal.  As a VBC user, if you've written a proposal that describes this better, please add that language to this page.&lt;br /&gt;
&lt;br /&gt;
--&lt;br /&gt;
&lt;br /&gt;
High performance Computing Cluster (Cheaha): &lt;br /&gt;
&lt;br /&gt;
Neuroimaging datasets are large and modern analysis techniques require state-of-the-art processing capabilities.  UAB's High Performance Computing cluster has the capability to perform the complex processing we propose here.  **The following section contains older information -- you may want to refer to the cheaha site for the most up-to-date specs on the system. UAB IT Research Computing maintains high performance compute and storage resources for investigators. The Cheaha compute cluster includes 192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network. A high-performance, 180TB Lustre parallel file system built on a Direct Data Network (DDN) hardware platform is also connected to these cores via the Infiniband fabric. An additional 20TB of traditional SAN storage is available via a 1GigE network fabric. This general access compute fabric is available to all UAB investigators.&lt;br /&gt;
Additionally, NIH funded investigators are granted priority access to the NIH SIG award acquired compute and storage pool that includes an additional 576 2.66GHz Intel-based compute cores, 2.3TB RAM and 180TB in the high-performance Lustre parallel file system all interconnected via a QDR Infiniband network fabric.**   Our research group has been working with UAB IT research computing to develop an efficient workflow for neuroimaging using the Cheaha system.  Support for this work is provided in part through the Visual Brain Core at UAB (https://docs.uabgrid.uab.edu/wiki/VisualBrainCore).  &lt;br /&gt;
More information about Cheaha is available at: docs.uabgrid.uab.edu/wiki/Cheaha &lt;br /&gt;
&lt;br /&gt;
Location: Rust Building, accessible remotely&lt;br /&gt;
&lt;br /&gt;
==back to VBC page==&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5572</id>
		<title>Grant Proposal Language</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5572"/>
		<updated>2017-05-31T22:49:41Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Quotations from previous proposals using CINL resources are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
In addition to expertise available within the lab, we will also make use of UAB’s Visual Brain Core, which provides development and help with neuroimaging tools (docs.uabgrid.uab.edu/wiki/VisualBrainCore).  Access to computing infrastructure (192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network) and supplemental data analysis help (a masters level computing systems administrator and PhD-level algorithms specialist) will ensure the accuracy and validity of the analysis methods planned above, but will also ensure that methods that may arise during the grant period can be applied to the analyses of our data.&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
An example budget justification from a previous grant:&lt;br /&gt;
&lt;br /&gt;
'''NAME HERE, Postdoctoral Researcher/ Analyst (1.2 months)''' A high level researcher  will be needed to assist with programming data analysis and stimulus presentation scripts, as well as with overseeing our data backup system.  Dr. NAMEis an experienced programmer for fMRI data analysis, and holds a position shared among several labs within the UAB neuroimaging community, as part of the Visual Brain Core (see docs.uabgrid.uab.edu/wiki/VisualBrainCore).  She will devote 1.2 calendar months to this project.&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
The following is one way to describe the available computing resources in a proposal.  As a VBC user, if you've written a proposal that describes this better, please add that language to this page.&lt;br /&gt;
&lt;br /&gt;
--&lt;br /&gt;
&lt;br /&gt;
High performance Computing Cluster (Cheaha): &lt;br /&gt;
&lt;br /&gt;
Neuroimaging datasets are large and modern analysis techniques require state-of-the-art processing capabilities.  UAB's High Performance Computing cluster has the capability to perform the complex processing we propose here.  **The following section contains older information -- you may want to refer to the cheaha site for the most up-to-date specs on the system. UAB IT Research Computing maintains high performance compute and storage resources for investigators. The Cheaha compute cluster includes 192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network. A high-performance, 180TB Lustre parallel file system built on a Direct Data Network (DDN) hardware platform is also connected to these cores via the Infiniband fabric. An additional 20TB of traditional SAN storage is available via a 1GigE network fabric. This general access compute fabric is available to all UAB investigators.&lt;br /&gt;
Additionally, NIH funded investigators are granted priority access to the NIH SIG award acquired compute and storage pool that includes an additional 576 2.66GHz Intel-based compute cores, 2.3TB RAM and 180TB in the high-performance Lustre parallel file system all interconnected via a QDR Infiniband network fabric.&lt;br /&gt;
**   Our research group has been working with UAB IT research computing to develop an efficient workflow for neuroimaging using the Cheaha system.  Support for this work is provided in part through the Visual Brain Core at UAB (https://docs.uabgrid.uab.edu/wiki/VisualBrainCore).  &lt;br /&gt;
More information about Cheaha is available at: docs.uabgrid.uab.edu/wiki/Cheaha &lt;br /&gt;
&lt;br /&gt;
Location: Rust Building, accessible remotely&lt;br /&gt;
&lt;br /&gt;
==back to VBC page==&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5571</id>
		<title>Grant Proposal Language</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Grant_Proposal_Language&amp;diff=5571"/>
		<updated>2017-05-31T22:48:48Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: Created page with &amp;quot;The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming gra...&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
In addition to expertise available within the lab, we will also make use of UAB’s Visual Brain Core, which provides development and help with neuroimaging tools (docs.uabgrid.uab.edu/wiki/VisualBrainCore).  Access to computing infrastructure (192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network) and supplemental data analysis help (a masters level computing systems administrator and PhD-level algorithms specialist) will ensure the accuracy and validity of the analysis methods planned above, but will also ensure that methods that may arise during the grant period can be applied to the analyses of our data.&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
An example budget justification from a previous grant:&lt;br /&gt;
&lt;br /&gt;
'''NAME HERE, Postdoctoral Researcher/ Analyst (1.2 months)''' A high level researcher  will be needed to assist with programming data analysis and stimulus presentation scripts, as well as with overseeing our data backup system.  Dr. NAMEis an experienced programmer for fMRI data analysis, and holds a position shared among several labs within the UAB neuroimaging community, as part of the Visual Brain Core (see docs.uabgrid.uab.edu/wiki/VisualBrainCore).  She will devote 1.2 calendar months to this project.&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
The following is one way to describe the available computing resources in a proposal.  As a VBC user, if you've written a proposal that describes this better, please add that language to this page.&lt;br /&gt;
&lt;br /&gt;
--&lt;br /&gt;
&lt;br /&gt;
High performance Computing Cluster (Cheaha): &lt;br /&gt;
&lt;br /&gt;
Neuroimaging datasets are large and modern analysis techniques require state-of-the-art processing capabilities.  UAB's High Performance Computing cluster has the capability to perform the complex processing we propose here.  **The following section contains older information -- you may want to refer to the cheaha site for the most up-to-date specs on the system. UAB IT Research Computing maintains high performance compute and storage resources for investigators. The Cheaha compute cluster includes 192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network. A high-performance, 180TB Lustre parallel file system built on a Direct Data Network (DDN) hardware platform is also connected to these cores via the Infiniband fabric. An additional 20TB of traditional SAN storage is available via a 1GigE network fabric. This general access compute fabric is available to all UAB investigators.&lt;br /&gt;
Additionally, NIH funded investigators are granted priority access to the NIH SIG award acquired compute and storage pool that includes an additional 576 2.66GHz Intel-based compute cores, 2.3TB RAM and 180TB in the high-performance Lustre parallel file system all interconnected via a QDR Infiniband network fabric.&lt;br /&gt;
**   Our research group has been working with UAB IT research computing to develop an efficient workflow for neuroimaging using the Cheaha system.  Support for this work is provided in part through the Visual Brain Core at UAB (https://docs.uabgrid.uab.edu/wiki/VisualBrainCore).  &lt;br /&gt;
More information about Cheaha is available at: docs.uabgrid.uab.edu/wiki/Cheaha &lt;br /&gt;
&lt;br /&gt;
Location: Rust Building, accessible remotely&lt;br /&gt;
&lt;br /&gt;
==back to VBC page==&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5570</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5570"/>
		<updated>2017-05-31T22:48:23Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
&lt;br /&gt;
==Visual Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Visual Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For Visual Brain Core==&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. &lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am -2:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Seminar Series and Neuroimaging Journal Club===&lt;br /&gt;
Visual Brain Core seminar series includes high level speakers usually from outside UAB.  Every third Friday at noon in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
The Neuroimaging journal club is for UAB and Auburn researchers to share their work, or journal articles of their interest with our neuroimaging community.  &lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The Visual Brain Core must be eventually supported by users.  For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided here: [[Grant Proposal Language]].&lt;br /&gt;
&lt;br /&gt;
===VBC Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5569</id>
		<title>In this link</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5569"/>
		<updated>2017-05-31T22:45:10Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
In addition to expertise available within the lab, we will also make use of UAB’s Visual Brain Core, which provides development and help with neuroimaging tools (docs.uabgrid.uab.edu/wiki/VisualBrainCore).  Access to computing infrastructure (192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network) and supplemental data analysis help (a masters level computing systems administrator and PhD-level algorithms specialist) will ensure the accuracy and validity of the analysis methods planned above, but will also ensure that methods that may arise during the grant period can be applied to the analyses of our data.&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
An example budget justification from a previous grant:&lt;br /&gt;
&lt;br /&gt;
'''NAME HERE, Postdoctoral Researcher/ Analyst (1.2 months)''' A high level researcher  will be needed to assist with programming data analysis and stimulus presentation scripts, as well as with overseeing our data backup system.  Dr. NAMEis an experienced programmer for fMRI data analysis, and holds a position shared among several labs within the UAB neuroimaging community, as part of the Visual Brain Core (see docs.uabgrid.uab.edu/wiki/VisualBrainCore).  She will devote 1.2 calendar months to this project.&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
The following is one way to describe the available computing resources in a proposal.  As a VBC user, if you've written a proposal that describes this better, please add that language to this page.&lt;br /&gt;
&lt;br /&gt;
--&lt;br /&gt;
&lt;br /&gt;
High performance Computing Cluster (Cheaha): &lt;br /&gt;
&lt;br /&gt;
Neuroimaging datasets are large and modern analysis techniques require state-of-the-art processing capabilities.  UAB's High Performance Computing cluster has the capability to perform the complex processing we propose here.  **The following section contains older information -- you may want to refer to the cheaha site for the most up-to-date specs on the system. UAB IT Research Computing maintains high performance compute and storage resources for investigators. The Cheaha compute cluster includes 192 3.0GHz Intel-based compute cores with 386GB of RAM interconnected via a DDR Infiniband network. A high-performance, 180TB Lustre parallel file system built on a Direct Data Network (DDN) hardware platform is also connected to these cores via the Infiniband fabric. An additional 20TB of traditional SAN storage is available via a 1GigE network fabric. This general access compute fabric is available to all UAB investigators.&lt;br /&gt;
Additionally, NIH funded investigators are granted priority access to the NIH SIG award acquired compute and storage pool that includes an additional 576 2.66GHz Intel-based compute cores, 2.3TB RAM and 180TB in the high-performance Lustre parallel file system all interconnected via a QDR Infiniband network fabric.&lt;br /&gt;
**   Our research group has been working with UAB IT research computing to develop an efficient workflow for neuroimaging using the Cheaha system.  Support for this work is provided in part through the Visual Brain Core at UAB (https://docs.uabgrid.uab.edu/wiki/VisualBrainCore).  &lt;br /&gt;
More information about Cheaha is available at: docs.uabgrid.uab.edu/wiki/Cheaha &lt;br /&gt;
&lt;br /&gt;
Location: Rust Building, accessible remotely&lt;br /&gt;
&lt;br /&gt;
==back to VBC page==&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5568</id>
		<title>In this link</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5568"/>
		<updated>2017-05-31T22:36:40Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
==general resources==&lt;br /&gt;
&lt;br /&gt;
==MRI facility resources==&lt;br /&gt;
&lt;br /&gt;
==personnel resources==&lt;br /&gt;
&lt;br /&gt;
==computing resources==&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=MRI_facility_resources&amp;diff=5567</id>
		<title>MRI facility resources</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=MRI_facility_resources&amp;diff=5567"/>
		<updated>2017-05-31T22:35:25Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: Created page with &amp;quot;Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION  A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan Intern...&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Civitan International Research Center’s Functional Neuroimaging Laboratory: fMRI DATA ACQUISITION&lt;br /&gt;
&lt;br /&gt;
A state-of-the-art 3 Tesla Siemens Prisma magnet is  at our Civitan International Neuroimaging Laboratory at UAB Highlands (see https://www.uab.edu/medicine/circ/neuroimaging for more details).  The Prisma is the most current upgrade to Siemens’ research line of scanners with excellent field stability that is optimized for MPRAGE, EPI and DTI scan acquisition as is required for many protocols including the “Human Connectome Project” protocols which we use regularly. We have a 20 channel and a 64 channel coil system, with many WIP agreements for performing cutting edge research quality scans.  &lt;br /&gt;
The facility includes ‘landing space’ for six trainees to work, two fully equipped testing rooms for working with participants, an equipment room including eye tracking equipment, a Bold++ display screen for showing high quality stimuli to participants, high quality audio equipment. &lt;br /&gt;
CINL Director Dr. Mark Bolding oversees the facility, with help from Co-Director Dr. Kristina Visscher.  They are assisted by Dr. John Totenhagen who spends full time at the magnet working with users and keeping the facility running smoothly.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5566</id>
		<title>In this link</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=In_this_link&amp;diff=5566"/>
		<updated>2017-05-31T22:34:48Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;The Visual Brain Core must be eventually supported by users. For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided below.  Please email kmv@uab.edu to discuss exact budget amounts.&lt;br /&gt;
&lt;br /&gt;
Also, if you have a good write up about this, please add it to the wiki&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[general resources]]&lt;br /&gt;
&lt;br /&gt;
[[MRI facility resources]]&lt;br /&gt;
&lt;br /&gt;
[[personnel resources]]&lt;br /&gt;
&lt;br /&gt;
[[computing resources]]&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5563</id>
		<title>Partial list of manuscripts</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5563"/>
		<updated>2017-05-17T21:20:44Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Please add to this list of papers that have resulted from visual brain core and Civitan International Neuroimaging Laboratory resources.&lt;br /&gt;
&lt;br /&gt;
1.	Griffis JC, Elkhetali AS, Burge WK, Chen RH, Visscher KM. (2015) Retinotopic patterns of background connectivity between V1 and fronto-parietal cortex are modulated by task demands. Front Hum Neurosci.  Jun 8;9:338. PMID: 26106320&lt;br /&gt;
&lt;br /&gt;
2.	Griffis, JC, Elkhetali, AS, Vaden, RJ,  Visscher, KM (2015) Distinct effects of trial-driven and task set-related control in primary visual cortex. Neuroimage 120, 285–297.  PMID 26163806&lt;br /&gt;
&lt;br /&gt;
3.	Schmidt EL, Burge WK, Visscher KM, Ross LA (2015) Cortical Thickness in Frontoparietal and Cinglo-opercular Networks Predicts Executive Function Performance in Older Adults.  Neuropsychology Oct 12.  PMID 26460586&lt;br /&gt;
&lt;br /&gt;
4.	Kraguljac NV, White DM, Hadley JA, Visscher KM, Knight D, ver Hoef L, Falola B, Lahti AC (2016) Abnormalities in large scale functional networks in unmedicated patients with schizophrenia and effects of risperidone. NeuroImage Clinical. 10, 146–158.&lt;br /&gt;
&lt;br /&gt;
5.	Burge, W., Griffis, J., Nenert, R., Elkhetali, A., DeCarlo, D., ver Hoef, L., Ross, L., Visscher, K., (2016). Cortical thickness in human V1 associated with central vision loss. Scientific Reports, Mar 24, 6:23268 PMID: 27009536&lt;br /&gt;
&lt;br /&gt;
6.	Griffis, J. C., Burge, W. K., &amp;amp; Visscher, K. (2016). Age-dependent cortical thinning of peripheral visual field representations in primary visual cortex. Frontiers in Aging Neuroscience, 8(October), 1–7. http://doi.org/10.3389/fnagi.2016.00248&lt;br /&gt;
&lt;br /&gt;
7.	Griffis, J., Elkhetali, A., Burge, W., Chen, R., Bowman, A., Szaflarski, J., &amp;amp; Visscher, K. (2016). Retinotopic patterns of functional connectivity between V1 and large-scale brain networks during resting fixation. NeuroImage, 1, 1–13. http://doi.org/10.1017/CBO9781107415324.004&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5562</id>
		<title>Partial list of manuscripts</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5562"/>
		<updated>2017-05-17T21:20:24Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Please add to this list of papers that have resulted from visual brain core and Civitan International Neuroimaging Laboratory resources.&lt;br /&gt;
&lt;br /&gt;
1.	Griffis JC, Elkhetali AS, Burge WK, Chen RH, Visscher KM. (2015) Retinotopic patterns of background connectivity between V1 and fronto-parietal cortex are modulated by task demands. Front Hum Neurosci.  Jun 8;9:338. PMID: 26106320&lt;br /&gt;
2.	Griffis, JC, Elkhetali, AS, Vaden, RJ,  Visscher, KM (2015) Distinct effects of trial-driven and task set-related control in primary visual cortex. Neuroimage 120, 285–297.  PMID 26163806&lt;br /&gt;
3.	Schmidt EL, Burge WK, Visscher KM, Ross LA (2015) Cortical Thickness in Frontoparietal and Cinglo-opercular Networks Predicts Executive Function Performance in Older Adults.  Neuropsychology Oct 12.  PMID 26460586&lt;br /&gt;
4.	Kraguljac NV, White DM, Hadley JA, Visscher KM, Knight D, ver Hoef L, Falola B, Lahti AC (2016) Abnormalities in large scale functional networks in unmedicated patients with schizophrenia and effects of risperidone. NeuroImage Clinical. 10, 146–158.&lt;br /&gt;
5.	Burge, W., Griffis, J., Nenert, R., Elkhetali, A., DeCarlo, D., ver Hoef, L., Ross, L., Visscher, K., (2016). Cortical thickness in human V1 associated with central vision loss. Scientific Reports, Mar 24, 6:23268 PMID: 27009536&lt;br /&gt;
6.	Griffis, J. C., Burge, W. K., &amp;amp; Visscher, K. (2016). Age-dependent cortical thinning of peripheral visual field representations in primary visual cortex. Frontiers in Aging Neuroscience, 8(October), 1–7. http://doi.org/10.3389/fnagi.2016.00248&lt;br /&gt;
7.	Griffis, J., Elkhetali, A., Burge, W., Chen, R., Bowman, A., Szaflarski, J., &amp;amp; Visscher, K. (2016). Retinotopic patterns of functional connectivity between V1 and large-scale brain networks during resting fixation. NeuroImage, 1, 1–13. http://doi.org/10.1017/CBO9781107415324.004&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5561</id>
		<title>Partial list of manuscripts</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=Partial_list_of_manuscripts&amp;diff=5561"/>
		<updated>2017-05-17T21:13:22Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: Created page with &amp;quot;Please add to this list of papers that have resulted from visual brain core and Civitan International Neuroimaging Laboratory resources.&amp;quot;&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;Please add to this list of papers that have resulted from visual brain core and Civitan International Neuroimaging Laboratory resources.&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5560</id>
		<title>VisualBrainCore</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=VisualBrainCore&amp;diff=5560"/>
		<updated>2017-05-17T21:11:20Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: /* Neuroimaging and Systems Neuroscience Labs at UAB */&lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[[File:Core.png|thumb|500px]]&lt;br /&gt;
&lt;br /&gt;
==Visual Brain Core Mission==&lt;br /&gt;
Our mission is to help produce high quality, cutting edge research examining the visual brain. To achieve this, we will help investigators overcome some common barriers to performing high quality vision research, and provide forums to discuss new ideas and research techniques.&lt;br /&gt;
&lt;br /&gt;
[[The 5 aims of the Visual Brain Core]]&lt;br /&gt;
&lt;br /&gt;
[[Media:Visual_Brain_Core_Poster.pdf | Visual Brain Core Poster]]&lt;br /&gt;
&lt;br /&gt;
==Information For Visual Brain Core==&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Personnel and Office Hours===&lt;br /&gt;
&lt;br /&gt;
*Demet Gurler, PhD: Consultation on experimental design and data analysis issues. &lt;br /&gt;
*Ravi Tripathi, MS: Computer Systems Specialist.  Consultation on high performance computing and algorithm issues. &lt;br /&gt;
**'''Office Hours: &lt;br /&gt;
**'''Monday, 10:00 am -2:00 pm, Civitan International Research Center, Second floor lobby or room 235C.'''&lt;br /&gt;
** '''Thursday, 9:00 am-12:00 pm, Civitan International Research Center, Room 235C.'''&lt;br /&gt;
&lt;br /&gt;
===Visual Brain Core Seminar Series===&lt;br /&gt;
Every first Friday, 3:30 PM in CIRC 120.  &lt;br /&gt;
We will discuss new ideas and techniques in brain imaging. &lt;br /&gt;
&lt;br /&gt;
[[List of speakers in Visual Brain Core Seminar Series]]&lt;br /&gt;
&lt;br /&gt;
===For Use in Grant Proposals:===&lt;br /&gt;
The Visual Brain Core must be eventually supported by users.  For this reason, we ask that you include use of the Visual Brain Core resources in the budget of your upcoming grants. Quotations from previous proposals are provided [[in this link]].&lt;br /&gt;
&lt;br /&gt;
===VBC Mailing List:===&lt;br /&gt;
To subscribe to the VBC mailing list, click [mailto:sympa@vo.uabgrid.uab.edu?subject=none&amp;amp;body=subscribe%20vbc here] (and send the email without any changes) '''''or''''' send an email to [mailto:sympa@vo.uabgrid.uab.edu sympa@vo.uabgrid.uab.edu] with the following text in the body of the email '''subscribe vbc'''&lt;br /&gt;
&lt;br /&gt;
===[[BrainhackUAB]]===&lt;br /&gt;
&lt;br /&gt;
===[[Other information]]===&lt;br /&gt;
&lt;br /&gt;
==Neuroimaging at UAB==&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Facilities===&lt;br /&gt;
&lt;br /&gt;
&lt;br /&gt;
[[Civitan International Neuroimaging Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[UAB-HSF MEG Laboratory]]&lt;br /&gt;
&lt;br /&gt;
[[Small Animal Imaging Shared Facility]]&lt;br /&gt;
&lt;br /&gt;
Equipment for collecting behavioral data during Neuroimaging&lt;br /&gt;
&lt;br /&gt;
*[http://www.sr-research.com/EL_1000.html Eye Tracker]&lt;br /&gt;
&lt;br /&gt;
===Neuroimaging and Systems Neuroscience Labs at UAB===&lt;br /&gt;
*[http://www.markbolding.com/ Bolding Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/engineering/home/component/contact/contact/82-be/19-allan-c-dobbins?Itemid=999/ Dobbins Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/medicine/ophthalmology/faculty/gamlin/ Gamlin Lab]&lt;br /&gt;
&lt;br /&gt;
*[https://www.uab.edu/optometry/home/faculty-staff/faculty-directory/29-facultystaff/facultybio/111-gawnetimothy/ Gawne Lab]&lt;br /&gt;
 &lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/71-merida-m-grant/ Grant Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cbra/ Kana Lab/Cognition, Brain, and Autism Laboratory]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/radiology/directory/neuro-imaging/24-directory/neuro-imaging/470-rkessler Kessler Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/cas/psychology/psy-fac/33-primary-faculty/48-dr-david-knight Knight Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://labs.uab.edu/kwon/ Kwon Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/psychiatry/faculty/faculty-bios/78-adrienne-c-lahti Lahti Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.mcconathylab.com/ McConathy Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/skidmore/ Skidmore Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/a-z/szaflarski Szaflarski Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://visscher.neurobiology.uab.edu/Home.html Visscher Lab ]&lt;br /&gt;
&lt;br /&gt;
*[http://www.uab.edu/medicine/neurology/faculty/by-specialty/walker Walker Lab]&lt;br /&gt;
&lt;br /&gt;
*[http://www.psy.uab.edu/younger/ Younger Lab/Neuroinflammation, Pain and Fatigue Laboratory]&lt;br /&gt;
&lt;br /&gt;
(UAB folks, please let us know if your lab should be included on this list, or add more information about it!)&lt;br /&gt;
&lt;br /&gt;
Here is a [[partial list of manuscripts]] that have resulted from CINL and Visual Brain Core resources.&lt;br /&gt;
&lt;br /&gt;
===Cluster Computing Environment at UAB: Cheaha===&lt;br /&gt;
* [[Cheaha_GettingStarted]] - information on getting an account and learning about how to use the cluster&lt;br /&gt;
* [[Cheaha]] - background information on the cluster useful for grants and publications&lt;br /&gt;
&lt;br /&gt;
===UAB-Auburn University Collaboration for Neuroimaging===&lt;br /&gt;
&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/ Auburn University MRI Research Center]'''&lt;br /&gt;
'''[http://www.eng.auburn.edu/research/centers/mri/equipment/siemens-magnetom-7t.html Siemens Magnetom 7T]'''&lt;br /&gt;
&lt;br /&gt;
'''UAB &amp;amp; Auburn Neuroimaging Journal Club'''&lt;br /&gt;
&lt;br /&gt;
*Neuroimaging journal Club. Every other Friday at noon, second floor CIRC. Contact Adrienne Lahti to get on the mailing list alahti at uab.edu&lt;br /&gt;
&lt;br /&gt;
'''[[UAB &amp;amp; Auburn Neuroimaging Retreat]]'''&lt;br /&gt;
&lt;br /&gt;
[[Photos]]&lt;br /&gt;
&lt;br /&gt;
==How To...==&lt;br /&gt;
&lt;br /&gt;
===Computer and coding related how-to's===&lt;br /&gt;
&lt;br /&gt;
[[Using Linux]]&lt;br /&gt;
&lt;br /&gt;
[[Matlab]]&lt;br /&gt;
&lt;br /&gt;
[[Psychtoolbox]]&lt;br /&gt;
&lt;br /&gt;
[[Coding Help]]&lt;br /&gt;
&lt;br /&gt;
[[https://docs.uabgrid.uab.edu/wiki/Box.com_bulk_transfer Saving Data in Box]]&lt;br /&gt;
&lt;br /&gt;
*[[Unix shortcuts]]&lt;br /&gt;
*[[Eye Tracker]]&lt;br /&gt;
&lt;br /&gt;
===fMRI related how-to's and important links===&lt;br /&gt;
&lt;br /&gt;
[[General Information]]&lt;br /&gt;
&lt;br /&gt;
[[Tools]]&lt;br /&gt;
&lt;br /&gt;
[[Brain atlases]]&lt;br /&gt;
&lt;br /&gt;
[[Cool Websites for Beginners]]&lt;br /&gt;
&lt;br /&gt;
[[fMRI statistics]]&lt;br /&gt;
&lt;br /&gt;
===UAB Neuroimaging Tools and How-To's (requires blazer id)===&lt;br /&gt;
&lt;br /&gt;
[[Imaging Protocols]]&lt;br /&gt;
&lt;br /&gt;
[[Analysis Scripts]]&lt;br /&gt;
&lt;br /&gt;
[[Behavioral data analysis techniques]]&lt;br /&gt;
&lt;br /&gt;
[[Institutional Review Board]]&lt;br /&gt;
&lt;br /&gt;
[[https://uab.box.com/s/1wtg1qbk9st1pekui2dtjksvt2os9els blah]]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
	<entry>
		<id>https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5556</id>
		<title>List of speakers in Visual Brain Core Seminar Series</title>
		<link rel="alternate" type="text/html" href="https://docs.uabgrid.uab.edu/w/index.php?title=List_of_speakers_in_Visual_Brain_Core_Seminar_Series&amp;diff=5556"/>
		<updated>2017-04-03T16:20:09Z</updated>

		<summary type="html">&lt;p&gt;Kmv@uab.edu: &lt;/p&gt;
&lt;hr /&gt;
&lt;div&gt;[https://docs.google.com/spreadsheets/d/1d5HD_QUg33LlkiQrFDsEjsqXt_tFecQtz5dPrWk2sB8/edit?usp=sharing Link] to list of upcoming speakers for combined VBC seminar series and Neuroimaging Journal club &lt;br /&gt;
&lt;br /&gt;
(previous talks from newest to oldest)&lt;br /&gt;
&lt;br /&gt;
'''March 3, 2017''': &amp;quot;Diffusion Imaging&amp;quot; Anastasia Yendiki, PhD, Massachusetts General Hospital&lt;br /&gt;
&lt;br /&gt;
'''Feb 3, 2017''': &amp;quot;Eddy for FSL: dealing with noise in diffusion images&amp;quot; Jesper Andersson, PhD, writer of EDDY software for Diffusion in FSL&lt;br /&gt;
&lt;br /&gt;
'''December 2, 2016''': &amp;quot;Power analysis for neuroimaging studies: Past, present and future&amp;quot; Jeanette Mumford, PhD, Center for Investigating Healthy Minds Waisman Center, University of Wisconsin-Madison&lt;br /&gt;
&lt;br /&gt;
'''November 4, 2016''': &amp;quot;TBA&amp;quot; Purushotham V. Bangalore, PhD, Department of Computer and Information Sciences, Interim Director of Research Computing, UAB.&lt;br /&gt;
&lt;br /&gt;
'''October 7, 2016''': No seminar due to CCTS Retreat&lt;br /&gt;
&lt;br /&gt;
'''September 9, 2016''': &amp;quot;Measuring Human Melanopsin Function&amp;quot; Geoffrey K. Aguirre, MD, PhD, Department of Neurology, University of Pennsylvania&lt;br /&gt;
&lt;br /&gt;
'''August 5, 2016''': TBA, Kamil Ugurbil, PhD, Director of the Center for Magnetic Resonance Research at the University of Minnesota.&lt;br /&gt;
&lt;br /&gt;
''' July-No Seminar''': &lt;br /&gt;
&lt;br /&gt;
'''June 3, 2016''': &amp;quot;Whole Lotta Shakin' Goin' On: The Artifact Runing your fMRI Data&amp;quot;, Erik H. Middlebrooks, Department of Radiology, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''May 6, 2016''': &amp;quot;Project Quality Assessment Protocol- a resource for measuring the quality of MRI data&amp;quot;, Cameron Craddock, PhD., Nathan S. Kline Institute for Psychiatric Research&lt;br /&gt;
&lt;br /&gt;
'''April 1, 2016''': &amp;quot;Microstructural Modeling in Diffusion MRI&amp;quot;, Kristi Klark, PhD, University of Southern California, Department of Neurology.&lt;br /&gt;
&lt;br /&gt;
'''March 4, 2016''': &amp;quot;Using XNAT for neuroimaging data management, sharing, and analysis&amp;quot;, Daniel S. Marcus, PhD., Director, Neuroimaging Information Analysis Center, Washington University School of Medicine in St. Louis.&lt;br /&gt;
&lt;br /&gt;
'''February 5, 2016''': &amp;quot;The future of fMRI in  Cognitive Neuroscience&amp;quot;, Russel Poldrack, PhD, Stanford University, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''December 4, 2015''': &amp;quot;Age Differences in Brain Functioning During Memory Formation and Retrieval&amp;quot;, Ian M. McDonough, University of Alabama, Department of Psychology.&lt;br /&gt;
&lt;br /&gt;
'''November 6, 2015''': &amp;quot;Contributions and Challenges for Network Models in Cognitive Neuroscience&amp;quot;, Paper Discussion, presentation by Jarrod Hicks.&lt;br /&gt;
&lt;br /&gt;
'''October 2, 2015''': &amp;quot;Resting State Functional Connectivity: Methods, Debates and Clinical Applications&amp;quot; Susan Whitfield Gabrieli, PhD, Massachusetts Institute of Technology (MIT)&lt;br /&gt;
&lt;br /&gt;
'''August 7, 2015''': &amp;quot;Research Computing, Storage, and Networks: the UAB vision and other imperatives for innovation&amp;quot;  Curtis Carver, PhD, Vice President and Chief Information Officer, UAB Information Technology&lt;br /&gt;
&lt;br /&gt;
'''June 5, 2015''': &amp;quot;Which fMRI Analysis Software?&amp;quot; Speakers: David Knight, PhD, Department of Psychology; Rodolphe Nenert, PhD, Department of Neurology; Rishi Deshpande, MS, Department of Radiology.''&lt;br /&gt;
&lt;br /&gt;
'''May 1, 2015''': &amp;quot;13C MRS Studies of Brain Metabolism of Alcohol and Acetate&amp;quot; Speaker: Graeme F. Mason, PhD, Department of Diagnostic Radiology, Department of Psychiatry, Yale School of Medicine.&lt;br /&gt;
&lt;br /&gt;
'''April 3, 2015''': &amp;quot;Generalized Psychophysical Interactions (gPPI): What are they and What they can tell us&amp;quot; Speaker: Donald McLaren, PhD, Department of Neurology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''March 6, 2015''': &amp;quot;How do we measure functional connectivity? An interactive discussion of functional connectivity methods&amp;quot; Speaker: Kristina Visscher, PhD, University of Alabama at Birmingham.&lt;br /&gt;
&lt;br /&gt;
'''Feb 6, 2015''': &amp;quot;High Gradient Diffusion MRI from the Human Connectome Project&amp;quot; Speaker: Koene Van Dijk, PhD, Department of Radiology, Harvard Medical School.&lt;br /&gt;
&lt;br /&gt;
'''Jan 9, 2014''' : &amp;quot;UAB Research Computing Resources for Neuroimaging Research&amp;quot; Speakers: John-Paul Robinson, Mike Hanby, Thomas Anthony&lt;br /&gt;
&lt;br /&gt;
'''Nov 21, 2014''': &amp;quot;White Matter in the Older Brain is More Plastic than in the Younger Brain&amp;quot; Speaker: Yuka Sasaki, PhD, Department of Cognitive, Linguistic and Psychological &lt;br /&gt;
Sciences, Brown University.&lt;br /&gt;
&lt;br /&gt;
[https://docs.uabgrid.uab.edu/wiki/VisualBrainCore back to Visual Brain Core page]&lt;/div&gt;</summary>
		<author><name>Kmv@uab.edu</name></author>
	</entry>
</feed>