Cheaha Quick Start Softwares

'''NOTE: This page is still under development. Please refer to Cheaha_GettingStarted page for detailed documentation.'''

= Software = Cheaha's shared software stack includes many scientific computing softwares. Below is list of popular softwares available on Cheaha:
 * Amber
 * FFTW
 * Gromacs
 * GSL
 * NAMD
 * VMD
 * Intel Compilers
 * GNU Compilers
 * Java
 * R
 * OpenMPI
 * MATLAB

These softwares can be included in a job environment using environment modules. Environment modules make environment variables modification easy and repeatable. A complete list of shared software applications can be displayed using following modules command. $ module avail

Most of our shared software applications are installed in '/share/apps' directory, but users can install software in their home directories or request a project specific software install install directory in '/share/apps' space. Please refer to guidelines below to install software in your home directory.

If you would like Research Computing to install a specific software in '/share/apps', then please send us an email to our [mailto:support@vo.uabgrid.uab.edu team] with installation details.

= Examples =