Modules

This page shows a list of installed modules on the Cheaha research computing system. If you don't find a particular package listed on this page, please send a request to cheaha support to request the software.

This list is not exhaustive and may not reflect the accurate current versions of the different software installed on the system. Please see the output of the module avail command for the official list of software modules installed on Cheaha.

Last Update: 2019-06-13

Contents: | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

anvio
Available versions: 3

Command: module load rc/anvio

atom
Available versions: 1.30.0

Command: module load rc/atom

AFNI
Homepage: http://afni.nimh.nih.gov/

Description: AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data -a technique for mapping human brain activity.

Available versions: 17.1.08-intel-2016a-Python-2.7.11, dev-intel-2016a-Python-2.7.11, linux_openmp_64-goolf-1.7.20-20160616, 18.2.05-intel-2016a-Python-2.7.11

Command: module load AFNI

ANTs
Available versions: 2.1.0rc3-foss-2016a

Command: module load ANTs

APBS
Available versions: 1.4-linux-static-x86_64

Command: module load APBS

ASHS
Homepage: https://sites.google.com/site/hipposubfields/home

Description: Automatic Segmentation of Hippocampal Subfields (ASHS)

Available versions: rev103_20140612, 2.0.0_07202018

Command: module load ASHS

ATK
Homepage: https://developer.gnome.org/ATK/stable/

Description: ATK provides the set of accessibility interfaces that are implemented by othertoolkits and applications. Using the ATK interfaces, accessibility tools havefull access to view and control running applications.

Available versions: 2.18.0-intel-2016a, 2.26.0-intel-2017a

Command: module load ATK

ATLAS
Available versions: 3.10.1-gompi-1.5.12-LAPACK-3.4.2

Command: module load ATLAS

Amber
Available versions: 14-intel-2016a-AmberTools-15-patchlevel-13-13

Command: module load Amber

Anaconda2
Homepage: https://www.continuum.io/anaconda-overview}

Available versions: 4.0.0, 4.2.0

Command: module load Anaconda2

Aspera-Connect
Available versions: 3.6.1

Command: module load Aspera-Connect

AutoDock_Vina
Available versions: 1.1.2_linux_x86

Command: module load AutoDock_Vina

Autoconf
Homepage: http://www.gnu.org/software/autoconf/

Description: Autoconf is an extensible package of M4 macros that produce shell scriptsto automatically configure software source code packages. These scripts can adapt thepackages to many kinds of UNIX-like systems without manual user intervention. Autoconfcreates a configuration script for a package from a template file that lists theoperating system features that the package can use, in the form of M4 macro calls.

Available versions: 2.69, 2.69-GCC-4.8.4, 2.69-GCC-4.9.3-2.25, 2.69-GNU-4.9.3-2.25, 2.69-foss-2016a, 2.69-foss-2016b, 2.69-goolf-1.7.20, 2.69-intel-2015b, 2.69-intel-2016a, 2.69-GCCcore-6.3.0, 2.69-GCC-5.4.0-2.26, 2.69-intel-2017a, 2.69-GCCcore-6.4.0, 2.69-GCCcore-7.3.0, 2.69-GCCcore-5.4.0

Command: module load Autoconf

annovar
Available versions: 2016Feb01-foss-2015b-Perl-5.22.1

Command: module load annovar

ant
Available versions: 1.9.6-Java-1.7.0_80, 1.9.7-Java-1.8.0_92

Command: module load ant

ABySS
Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss

Description: Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

Available versions: 1.9.0-foss-2016a, 2.0.2-foss-2016a

Command: module load ABySS

Anaconda3
Homepage: https://www.continuum.io/anaconda-overview

Description: Built to complement the rich, open source Python community,the Anaconda platform provides an enterprise-ready data analytics platformthat empowers companies to adopt a modern open data science analytics architecture.

Available versions: 4.4.0, 5.0.1, 5.2.0, 5.1.0, 5.3.0

Command: module load Anaconda3

aaf-phylogeny
Available versions: 20160831

Command: module load aaf-phylogeny

acml
Available versions: gcc-int64/64/5.3.1, gcc-int64/fma4/5.3.1, gcc-int64/mp/64/5.3.1, gcc-int64/mp/fma4/5.3.1, gcc/64/5.3.1, gcc/fma4/5.3.1, gcc/mp/64/5.3.1, gcc/mp/fma4/5.3.1

Command: module load acml

BrainSuite
Available versions: 15b

Command: module load rc/BrainSuite

basespace-cli
Available versions: 0.8.12

Command: module load rc/basespace-cli

brainstorm
Available versions: 180709

Command: module load rc/brainstorm

BEDTools
Available versions: 2.26.0-foss-2016a

Command: module load BEDTools

BSMAP
Available versions: 2.90-foss-2016a

Command: module load BSMAP

BWA
Available versions: 0.7.13-intel-2015b, 0.7.13-intel-2016a

Command: module load BWA

BXH_XCEDE_TOOLS
Available versions: 1.11.1

Command: module load BXH_XCEDE_TOOLS

BamTools
Available versions: 2.4.0-goolf-1.7.20, 2.4.0-intel-2016a

Command: module load BamTools

Bismark
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/bismark/

Description: A tool to map bisulfite converted sequence reads anddetermine cytosine methylation states

Available versions: 0.10.1-goolf-1.4.10, 0.18.0-foss-2016a, 0.18.0-goolf-1.4.10, 0.19.0-foss-2016a

Command: module load Bismark

Bowtie
Homepage: http://bowtie-bio.sourceforge.net/index.shtml}

Available versions: 1.1.1-goolf-1.4.10, 1.1.2-foss-2016a

Command: module load Bowtie

Bowtie2
Homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

Description: Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing readsto long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000sof characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome,its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.

Available versions: 2.0.2-foss-2016a, 2.0.2-goolf-1.4.10, 2.2.5-goolf-1.7.20, 2.2.6-intel-2015b, 2.2.8-foss-2016a, 2.3.3-intel-2017a

Command: module load Bowtie2

BreakDancer
Available versions: 1.4.5-intel-2016a

Command: module load BreakDancer

BCFtools
Homepage: http://www.htslib.org/

Description: Samtools is a suite of programs for interacting with high-throughput sequencing data.BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequencevariants

Available versions: 1.3.1-goolf-1.7.20, 1.6-intel-2016a

Command: module load BCFtools

BLAST+
Homepage: http://blast.ncbi.nlm.nih.gov/

Description: Basic Local Alignment Search Tool, or BLAST, is an algorithmfor comparing primary biological sequence information, such as the amino-acidsequences of different proteins or the nucleotides of DNA sequences.

Available versions: 2.6.0-intel-2017a-Python-2.7.13

Command: module load BLAST+

Biopython
Homepage: http://www.biopython.org

Description: Biopython is a set of freely available tools for biological computation writtenin Python by an international team of developers. It is a distributed collaborative effort todevelop Python libraries and applications which address the needs of current and future work inbioinformatics.

Available versions: 1.70-intel-2017a-Python-3.6.1

Command: module load Biopython

bioitx
Available versions: jupyter-0.7, jupyter-0.8, jupyter-1.0, jupyter

Command: module load bioitx

blacs
Available versions: openmpi/gcc/64/1.1patch03

Command: module load blacs

blas
Available versions: gcc/64/3.8.0

Command: module load blas

bonnie++
Available versions: 1.97.3

Command: module load bonnie++

cmg
Available versions: 2012.116.G, 2016.101.GU

Command: module load rc/cmg

cytoscape
Available versions: 2.8.2

Command: module load rc/cytoscape

cellranger
Available versions: 2.1.1, 2.2.0

Command: module load rc/cellranger

crossmap
Available versions: 0.2.8

Command: module load rc/crossmap

chezscheme
Available versions: 9.5

Command: module load rc/chezscheme

ceres
Available versions: 1.14.0, 1.13.0

Command: module load rc/ceres

CBLAS
Available versions: 20110120-foss-2016b

Command: module load CBLAS

CD-HIT
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/

Description: CD-HIT is a very widely used program for clustering andcomparing protein or nucleotide sequences.

Available versions: 4.6.4-foss-2015b-2015-0603, 4.6.6-foss-2016b, 4.6.8-intel-2017a

Command: module load CD-HIT

CHARMM
Available versions: 40b1-intel-2016a

Command: module load CHARMM

CHASE
Available versions: v1

Command: module load CHASE

CUDA
Homepage: https://developer.nvidia.com/cuda-toolkit

Description: CUDA (formerly Compute Unified Device Architecture) is a parallelcomputing platform and programming model created by NVIDIA and implemented by thegraphics processing units (GPUs) that they produce. CUDA gives developers accessto the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.

Available versions: 7.5.18, 8.0.61_375.26-GCC-5.4.0-2.26, 8.0.61, 8.0.44, 9.2.148.1, 9.0.176, 9.2.88-GCC-7.3.0-2.30

Command: module load CUDA

Circos
Available versions: 0.69-5-intel-2016a-Perl-5.18.2

Command: module load Circos

ConnectomeWorkbench
Homepage: http://www.humanconnectome.org/software/connectome-workbench.html

Description: Connectome Workbench is an open-sourcevisualization and discovery tool used to explore data generatedby the Human Connectome Project. The distribution includes wb_view,a GUI-based visualization platform, and wb_command, a command-lineprogram for performing a variety of algorithmic tasks using volume,surface, and grayordinate data.

Available versions: 1.2.2, 1.3.1

Command: module load ConnectomeWorkbench

Cufflinks
Available versions: 2.2.1-foss-2016a, 2.2.1-goolf-1.7.20

Command: module load Cufflinks

cairo
Homepage: http://cairographics.org

Description: Cairo is a 2D graphics library with support for multiple output devices.Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers,PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

Available versions: 1.14.6-intel-2015b, 1.14.6-intel-2016a, 1.14.6-intel-2016a-GLib-2.48.0, 1.14.8-intel-2017a, 1.14.10-GCCcore-6.3.0, 1.14.6-foss-2016b, 1.14.6-foss-2016b-GLib-2.48.0, 1.14.6-foss-2016a-GLib-2.48.0, 1.14.12-GCCcore-6.4.0

Command: module load cairo

configurable-http-proxy
Available versions: 1.3.0-foss-2016a-nodejs-4.4.7

Command: module load configurable-http-proxy

cutadapt
Available versions: 1.14-foss-2016b-Python-2.7.12, 1.9.1-foss-2016b-Python-2.7.12, 1.12

Command: module load cutadapt

CTFFIND
Homepage: http://grigoriefflab.janelia.org/ctf

Description: CTFFIND4 is a program for finding CTFs of electron micrographs.

Available versions: 4.1.8-intel-2016a, 4.1.8-foss-2016b

Command: module load CTFFIND

cuDNN
Homepage: https://developer.nvidia.com/cudnn

Description: The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives fordeep neural networks.

Available versions: 6.0-CUDA-8.0.61, 5.1-CUDA-8.0.61, 7.0.5-CUDA-9.0.176

Command: module load cuDNN

ctffind
Homepage: http://grigoriefflab.janelia.org/ctffind4

Description: program for finding CTFs of electron micrographs

Available versions: 4.0.17-foss-2016b

Command: module load ctffind

cluster-tools-dell
Available versions: 8.1

Command: module load cluster-tools-dell

cluster-tools
Available versions: 8.1

Command: module load cluster-tools

cuda90
Available versions: blas/9.0.176, fft/9.0.176, nsight/9.0.176, profiler/9.0.176, toolkit/9.0.176

Command: module load cuda90

cuda91
Available versions: blas/9.1.85, fft/9.1.85, nsight/9.1.85, profiler/9.1.85, toolkit/9.1.85

Command: module load cuda91

cuda80
Available versions: blas/8.0.61, fft/8.0.61, nsight/8.0.61, profiler/8.0.61, toolkit/8.0.61

Command: module load cuda80

cuda10.0
Available versions: blas/10.0.130, fft/10.0.130, nsight/10.0.130, profiler/10.0.130, toolkit/10.0.130

Command: module load cuda10.0

cuda92
Available versions: blas/9.2.88, fft/9.2.88, nsight/9.2.88, profiler/9.2.88, toolkit/9.2.88

Command: module load cuda92

delly
Available versions: 0.7.6

Command: module load rc/delly

dsistudio
Available versions: dsistudio-20151020

Command: module load rc/dsistudio

detonate
Available versions: 1.11

Command: module load rc/detonate

dicombrowser
Available versions: 1.7.0b5

Command: module load rc/dicombrowser

drracket
Available versions: 7.1

Command: module load rc/drracket

DBus
Homepage: http://dbus.freedesktop.org/doc/dbus-glib

Description: D-Bus is a message bus system, a simple way for applications to talkto one another. In addition to interprocess communication, D-Bus helpscoordinate process lifecycle; it makes it simple and reliable to codea "single instance" application or daemon, and to launch applicationsand daemons on demand when their services are needed.

Available versions: 1.10.8-intel-2016a, 1.11.20-intel-2017a

Command: module load DBus

DMTCP
Available versions: 2.4.5, 2.5.0

Command: module load DMTCP

Doxygen
Homepage: http://www.doxygen.org

Description: Doxygen is a documentation system for C++, C, Java, Objective-C, Python,IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to someextent D.

Available versions: 1.8.11-foss-2016a, 1.8.11-foss-2016b, 1.8.11-intel-2015b, 1.8.11-intel-2016a, 1.8.13-GCCcore-6.3.0, 1.8.13-GCCcore-6.4.0

Command: module load Doxygen

damageproto
Available versions: 1.2.1-foss-2016b, 1.2.1-goolf-1.7.20, 1.2.1-intel-2016a

Command: module load damageproto

dbus-glib
Homepage: http://dbus.freedesktop.org/doc/dbus-glib

Description: D-Bus is a message bus system, a simple way for applications to talk to one another.

Available versions: 0.106-intel-2016a, 0.108-intel-2017a

Command: module load dbus-glib

DB
Homepage: http://www.oracle.com/technetwork/products/berkeleydb

Description: Berkeley DB enables the development of custom data management solutions,without the overhead traditionally associated with such custom projects.

Available versions: 6.0.30-foss-2016a, 6.2.32-intel-2017a

Command: module load DB

dvctools
Available versions: 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 0.2, 1.0, latest, recommended

Command: module load dvctools

EMAN2
Available versions: 2.2

Command: module load rc/EMAN2

EIGENSOFT
Homepage: http://www.hsph.harvard.edu/alkes-price/software/

Description: The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al.2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principalcomponents analysis to explicitly model ancestry differences between cases and controls along continuous axes ofvariation;  the resulting correction is specific to a candidate marker’s variation in frequency across ancestralpopulations,  minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFTpackage has a built-in plotting script and supports multiple file formats and quantitative phenotypes.

Available versions: 6.1.1-goolf-1.7.20, 6.1.4-foss-2016b

Command: module load EIGENSOFT

ENT
Available versions: 1.0.2

Command: module load ENT

EPACTS
Available versions: 3.2.6-foss-2016b

Command: module load EPACTS

Elk
Homepage: http://elk.sourceforge.net/}

Available versions: 4.0.15-intel-2016a, 4.3.6-intel-2016a

Command: module load Elk

Emacs
Available versions: 24.5-GCC-4.9.3-2.25

Command: module load Emacs

entrypoints
Available versions: 0.2.2-foss-2016a-Python-3.5.1

Command: module load entrypoints

eudev
Homepage: https://wiki.gentoo.org/wiki/Project:Eudev

Description: eudev is a fork of systemd-udev with the goal of obtainingbetter compatibility with existing software such asOpenRC and Upstart, older kernels, various toolchainsand anything else required by users and various distributions.

Available versions: 3.1.5-goolf-1.7.20, 3.1.5-intel-2016a, 3.1.5-foss-2016b

Command: module load eudev

EDGE_pro
Homepage: http://ccb.jhu.edu/software/EDGE-pro/

Description: EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes)is an efficient software system to estimate gene expression levels inprokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignmentand then estimates expression directly from the alignment results.

Available versions: 1.3.1

Command: module load EDGE_pro

exonerate
Available versions: 2.2.0

Command: module load exonerate

EDGE_pro_patch
Homepage: http://ccb.jhu.edu/software/EDGE-pro/

Description: EDGE-pro (Estimated Degree of Gene Expression in PROkaryotes)is an efficient software system to estimate gene expression levels inprokaryotic genomes from RNA-seq data. EDGE-pro uses Bowtie2 for alignmentand then estimates expression directly from the alignment results.

Available versions: 1.3.1-2

Command: module load EDGE_pro_patch

FSL
Homepage: http://www.fmrib.ox.ac.uk/fsl/

Description: FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Available versions: 5.0.9-Modified-fsl_sub, 6.0.0

Command: module load rc/FSL

fdtd
Available versions: 8.17.1157-1

Command: module load rc/fdtd

freesurfer
Available versions: freesurfer-5.3.0, freesurfer-5.3.0-HCP, Dev/10_29_16

Command: module load rc/freesurfer

fpart
Available versions: 1.1.0

Command: module load rc/fpart

freeimage
Available versions: 3.18

Command: module load rc/freeimage

FASTX-Toolkit
Available versions: 0.0.14-intel-2015b

Command: module load FASTX-Toolkit

FIAT
Available versions: 1.6.0-intel-2015b-Python-2.7.11

Command: module load FIAT

FLTK
Homepage: http://www.fltk.org

Description: FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows,and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGLand its built-in GLUT emulation.

Available versions: 1.3.3-intel-2016a, 1.3.3-foss-2016b

Command: module load FLTK

FLUENT
Homepage: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/Fluid+Dynamics+Products/ANSYS+Fluent

Description: ANSYS FLUENT software contains the broad physical modeling capabilities neededto model flow, turbulence, heat transfer, and reactions for industrial applications ranging fromair flow over an aircraft wing to combustion in a furnace, from bubble columns to oil platforms,from blood flow to semiconductor manufacturing, and from clean room design to wastewater treatment plants.

Available versions: 18.0, 19.1

Command: module load FLUENT

FSL
Homepage: http://www.fmrib.ox.ac.uk/fsl/

Description: FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.

Available versions: 5.0.9-centos6_64, 6.0.0-intel-2017a, 5.0.10-intel-2017a

Command: module load FSL

FastQC
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Description: FastQC is a quality control application for high throughput sequence data.It reads in sequence data in a variety of formats and can either provide an interactiveapplication to review the results of several different QC checks, or create an HTML basedreport which can be integrated into a pipeline.

Available versions: 0.11.5-Java-1.7.0_80, 0.11.5-Java-1.8.0_74, 0.11.7-Java-1.8.0_74

Command: module load FastQC

FastTree
Available versions: 2.1.7-goolf-1.4.10, 2.1.9-goolf-1.4.10

Command: module load FastTree

FreeSurfer
Available versions: 5.3.0-centos6_x86_64, 6.0.0-centos6_x86_64

Command: module load FreeSurfer

fastPHASE
Available versions: 1.4.8

Command: module load fastPHASE

file
Available versions: 5.28-foss-2016b

Command: module load file

fixesproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: X.org FixesProto protocol headers.

Available versions: 5.0-foss-2016b, 5.0-goolf-1.7.20, 5.0-intel-2015b, 5.0-intel-2016a, 5.0-foss-2016a

Command: module load fixesproto

flex
Homepage: http://flex.sourceforge.net/

Description: Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

Available versions: 2.5.35-foss-2016a, 2.5.39, 2.5.39-GCC-4.9.3-binutils-2.25, 2.5.39-GCCcore-4.9.3, 2.5.39-intel-2015b, 2.6.0, 2.6.0-GCCcore-5.4.0, 2.6.0-foss-2016a, 2.6.0-foss-2016b, 2.6.0-goolf-1.7.20, 2.6.0-intel-2015b, 2.6.0-intel-2016a, 2.6.3-GCCcore-6.3.0, 2.6.0-GCCcore-6.1.0, 2.6.4-GCCcore-6.3.0, 2.6.3, 2.6.4-GCCcore-6.4.0, 2.5.39-intel-2016a, 2.6.0-intel-2017a, 2.6.4, 2.6.4-GCCcore-7.3.0, 2.6.3-GCCcore-5.4.0, 2.6.4-GCCcore-5.4.0, 2.6.3-GCCcore-7.3.0

Command: module load flex

fontsproto
Available versions: 2.1.3-foss-2016b, 2.1.3-goolf-1.7.20, 2.1.3-intel-2016a

Command: module load fontsproto

freeglut
Homepage: http://freeglut.sourceforge.net/

Description: freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.

Available versions: 3.0.0-foss-2016b, 3.0.0-intel-2016a, 3.0.0-intel-2017a

Command: module load freeglut

FastQ_Screen
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastq_screen/

Description: FastQ Screen allows you to set up a standard set of librariesagainst which all of your sequences can be searched. Your search libraries mightcontain the genomes of all of the organisms you work on, along with PhiX,Vectors or other contaminants commonly seen in sequencing experiments.

Available versions: 0.11.2

Command: module load FastQ_Screen

Firefox
Homepage: https://www.mozilla.org/en-US/firefox/new/

Description: Firefox is a free, open source Web browser for Windows, Linux and Mac OS X. It is based on theMozilla code base and offers customization options and features such as its capability to block pop-up windows,tabbed browsing, privacy and security measures, smart searching, and RSS live bookmarks.

Available versions: 44.0.2

Command: module load Firefox

FreeXL
Homepage: https://www.gaia-gis.it/fossil/freexl/index

Description: FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.

Available versions: 1.0.2-foss-2016b, 1.0.2-intel-2016a

Command: module load FreeXL

freebayes
Homepage: https://github.com/ekg/freebayes

Description: Bayesian haplotype-based polymorphism discovery and genotyping.

Available versions: 1.1.0-goolf-1.7.20_39e5e4b

Command: module load freebayes

frealign
Homepage: http://grigoriefflab.janelia.org/frealign

Description: Frealign is a program for high-resolution refinement of 3D reconstructions from cryo-EM images ofsingle particles.

Available versions: 9.11-intel-2016a-avx-mp

Command: module load frealign

FriBidi
Homepage: https://directory.fsf.org/wiki/Fribidi

Description: FriBidi is a free implementation of the Unicode Bidirectional (BiDi) Algorithm. It also providesutility functions to aid in the development of interactive editors and widgets that implement BiDi functionality.The BiDi algorithm is a prerequisite for supporting right-to-left scripts such as Hebrew, Arabic, Syriac, andThaana.

Available versions: 1.0.1-foss-2016b

Command: module load FriBidi

freeipmi
Available versions: 1.5.7

Command: module load freeipmi

fftw2
Available versions: openmpi/gcc/64/double/2.1.5, openmpi/gcc/64/float/2.1.5

Command: module load fftw2

fftw3
Available versions: openmpi/gcc/64/3.3.7

Command: module load fftw3

GEMMA
Available versions: GEMMA_Rec

Command: module load rc/GEMMA

gromacs-intel
Available versions: 5.1.1, 2018.1

Command: module load rc/gromacs-intel

GeneTorrent
Available versions: GeneTorrent_4.0.0-9

Command: module load rc/GeneTorrent

GATK
Available versions: 3.7-Java-1.8.0_112, 3.7-Java-1.8.0_92

Command: module load GATK

GC3Pie
Available versions: 2.4.2

Command: module load GC3Pie

GCC
Homepage: http://gcc.gnu.org/

Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,as well as libraries for these languages (libstdc++, libgcj,...).

Available versions: 4.7.2, 4.8.1, 4.8.2, 4.8.4, 4.9.2, 4.9.3, 4.9.3-2.25, 4.9.3-binutils-2.25, 5.4.0-2.26, system, 6.1.0-2.27, 6.3.0-2.27, 6.4.0-2.28, 4.4.7, 7.3.0-2.30

Command: module load GCC

GCCcore
Homepage: http://gcc.gnu.org/

Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,as well as libraries for these languages (libstdc++, libgcj,...).

Available versions: 4.9.3, 5.4.0, 6.3.0, 6.1.0, 6.4.0, 7.3.0

Command: module load GCCcore

GD
Available versions: 2.52-intel-2016a-Perl-5.18.2

Command: module load GD

GDAL
Homepage: http://www.gdal.org/

Description: GDAL is a translator library for raster geospatial data formats that is released under an X/MIT styleOpen Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data modelto the calling application for all supported formats. It also comes with a variety of useful commandline utilities fordata translation and processing.

Available versions: 2.0.2-intel-2016a, 2.1.0-foss-2016a, 2.1.0-foss-2016b, 2.1.0-intel-2015b, 2.1.0-intel-2016a, 2.1.3-intel-2017a-Python-2.7.13, 2.1.3-foss-2016b-Python-2.7.12, 2.1.3-intel-2016a-Python-2.7.12, 2.2.3-foss-2018a-Python-3.6.4

Command: module load GDAL

GNU
Available versions: 4.9.3-2.25

Command: module load GNU

GObject-Introspection
Homepage: https://wiki.gnome.org/GObjectIntrospection/

Description: GObject introspection is a middleware layer between C libraries(using GObject) and language bindings. The C library can be scanned atcompile time and generate a metadata file, in addition to the actualnative C library. Then at runtime, language bindings can read thismetadata and automatically provide bindings to call into the C library.

Available versions: 1.47.1-foss-2016b, 1.47.1-intel-2016a, 1.48.0-intel-2016a, 1.53.5-intel-2017a-Python-2.7.13, 1.48.0-foss-2016b, 1.48.0-foss-2016a

Command: module load GObject-Introspection

GTK+
Homepage: https://developer.gnome.org/gtk+/stable/

Description: The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.

Available versions: 2.24.28-intel-2016a, 2.24.31-intel-2017a

Command: module load GTK+

Gdk-Pixbuf
Homepage: https://developer.gnome.org/gdk-pixbuf/stable/

Description: The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation.It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past itwas distributed as part of GTK+ 2 but it was split off into a separate packagein preparation for the change to GTK+ 3.

Available versions: 2.32.3-intel-2016a, 2.36.10-intel-2017a

Command: module load Gdk-Pixbuf

gawk
Available versions: 4.0.2-goolf-1.4.10

Command: module load gawk

gcccuda
Homepage: (none)

Description: GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.

Available versions: 2017.01, 2018b

Command: module load gcccuda

glproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: X protocol and ancillary headers

Available versions: 1.4.17-intel-2016a, 1.4.17-foss-2016b

Command: module load glproto

gnuplot
Available versions: 5.0.3-foss-2016b, 5.0.3-intel-2016a

Command: module load gnuplot

gnutls
Available versions: 3.4.7-GNU-4.9.3-2.25

Command: module load gnutls

goolf
Available versions: 1.4.10, 1.7.20

Command: module load goolf

grep
Available versions: 2.15-goolf-1.4.10

Command: module load grep

groff
Available versions: 1.22.2, 1.22.2-foss-2016b

Command: module load groff

gtool
Available versions: 0.7.5_linux_x86_64

Command: module load gtool

guile
Available versions: 1.8.8-GNU-4.9.3-2.25

Command: module load guile

GEOS
Homepage: http://trac.osgeo.org/geos

Description: GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)

Available versions: 3.6.1-intel-2017a-Python-2.7.13, 3.6.1-foss-2016b-Python-2.7.12, 3.6.1-intel-2016a-Python-2.7.12, 3.6.2-foss-2018a-Python-3.6.4

Command: module load GEOS

GStreamer
Homepage: http://gstreamer.freedesktop.org/

Description: GStreamer is a library for constructing graphs of media-handlingcomponents. The applications it supports range from simpleOgg/Vorbis playback, audio/video streaming to complex audio(mixing) and video (non-linear editing) processing.

Available versions: 0.10.36-intel-2017a, 1.8.3-foss-2016b, 1.8.3-foss-2016a

Command: module load GStreamer

GConf
Homepage: https://projects.gnome.org/gconf/

Description: GConf is a system for storing application preferences.It is intended for user preferences; not configurationof something like Apache, or arbitrary data storage.

Available versions: 3.2.6-intel-2017a

Command: module load GConf

GST-plugins-base
Homepage: http://gstreamer.freedesktop.org/

Description: GStreamer is a library for constructing graphs of media-handlingcomponents. The applications it supports range from simpleOgg/Vorbis playback, audio/video streaming to complex audio(mixing) and video (non-linear editing) processing.

Available versions: 0.10.36-intel-2017a

Command: module load GST-plugins-base

gdc-client
Homepage: https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool

Description: The gdc-client provides several convenience functions over the GDC API which provides generaldownload/upload via HTTPS.

Available versions: 1.0.1-intel-2016a-Python-2.7.12, 1.3.0-intel-2016a-Python-2.7.12

Command: module load gdc-client

Gctf
Homepage: https://www.mrc-lmb.cam.ac.uk/kzhang/

Description: Gctf is a tool for real-time CTF determination and correction.

Available versions: 1.06, 1.06_devel

Command: module load Gctf

gzip
Homepage: http://www.gnu.org/software/gzip/

Description: gzip (GNU zip) is a popular data compression program as a replacement for compress

Available versions: 1.8-GCCcore-6.3.0, 1.6

Command: module load gzip

gcc
Available versions: 7.2.0

Command: module load gcc

gdb
Available versions: 8.0.1

Command: module load gdb

globalarrays
Available versions: openmpi/gcc/64/5.6.1

Command: module load globalarrays

hydrasv
Available versions: 0.5.3

Command: module load rc/hydrasv

HOMER
Available versions: 4.9

Command: module load rc/HOMER

HAPGEN2
Available versions: 2.2.0

Command: module load HAPGEN2

HISAT2
Available versions: 2.1.0-foss-2016b

Command: module load HISAT2

HPL
Available versions: 2.1-intel-2016a, 2.2-intel-2016a

Command: module load HPL

HTSeq
Available versions: 0.6.1p1-foss-2016b-Python-2.7.12, 0.6.1p1-intel-2015b-Python-2.7.8

Command: module load HTSeq

HarfBuzz
Homepage: http://www.freedesktop.org/wiki/Software/HarfBuzz

Description: HarfBuzz is an OpenType text shaping engine.

Available versions: 1.1.3-foss-2016b, 1.1.3-intel-2016a, 1.2.7-intel-2016a, 1.5.1-intel-2017a

Command: module load HarfBuzz

Hypre
Available versions: 2.10.1-intel-2015b

Command: module load Hypre

h5py
Available versions: 2.5.0-intel-2016a-Python-2.7.11-HDF5-1.8.16

Command: module load h5py

help2man
Homepage: https://www.gnu.org/software/help2man/

Description: help2man produces simple manual pages from the '--help' and '--version' output of other commands.

Available versions: 1.47.4-GCCcore-6.3.0, 1.47.4, 1.47.4-GCCcore-6.4.0, 1.47.4-GCCcore-7.3.0, 1.47.4-GCCcore-5.4.0

Command: module load help2man

hwloc
Available versions: 1.10.1-GCC-4.8.4, 1.11.0-GNU-4.9.3-2.25, 1.11.1-iccifort-2015.3.187-GNU-4.9.3-2.25, 1.11.2-GCC-4.9.3-2.25, 1.11.3-GCC-5.4.0-2.26, 1.11.5-GCC-5.4.0-2.26, 1.6.2-GCC-4.7.2, 1.8.1-GCC-4.8.2, 1.11.3-intel-2017a, 1.11.3-GCC-6.1.0-2.27, 1.11.5-GCC-6.3.0-2.27, 1.11.8-GCCcore-6.4.0, 1.11.3-intel-2016a, 1.11.10-GCCcore-7.3.0, 1.11.8

Command: module load hwloc

HMMER
Homepage: http://hmmer.org/

Description: HMMER is used for searching sequence databases for homologs of protein sequences,and for making protein sequence alignments. It implements methods using probabilistic modelscalled profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and othersequence alignment and database search tools based on older scoring methodology,HMMER aims to be significantly more accurate and more able to detect remote homologsbecause of the strength of its underlying mathematical models. In the past, this strengthcame at significant computational expense, but in the new HMMER3 project, HMMER is nowessentially as fast as BLAST.

Available versions: 3.1b2-intel-2016a

Command: module load HMMER

hdf5
Available versions: 1.10.1

Command: module load hdf5

hdf5_18
Available versions: 1.8.20

Command: module load hdf5_18

hpl
Available versions: 2.2

Command: module load hpl

intel
Available versions: compiler/64/ps_2016/2016.0.047

Command: module load rc/intel

IMPUTE2
Available versions: 2.3.0_x86_64_static, 2.3.2_x86_64_static

Command: module load IMPUTE2

IPython
Available versions: 3.2.0-intel-2015b-Python-2.7.9, 5.0.0-foss-2016a-Python-3.5.1

Command: module load IPython

icc
Homepage: http://software.intel.com/en-us/intel-compilers/

Description: C and C++ compiler from Intel

Available versions: 2015.3.187, 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26

Command: module load icc

iccifort
Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/

Description: Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI andIntel MKL

Available versions: 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26

Command: module load iccifort

ifort
Homepage: http://software.intel.com/en-us/intel-compilers/

Description: Fortran compiler from Intel

Available versions: 2015.3.187-GNU-4.9.3-2.25, 2016.1.150-GCC-4.9.3-2.25, 2017.1.132-GCC-6.3.0-2.27, 2017.4.196-GCC-6.4.0-2.28, 2016.3.210-GCC-5.4.0-2.26

Command: module load ifort

iimpi
Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/

Description: Intel C/C++ and Fortran compilers, alongside Intel MPI.

Available versions: 7.3.5-GNU-4.9.3-2.25, 8.1.5-GCC-4.9.3-2.25, 2017a, 2016b

Command: module load iimpi

imkl
Homepage: http://software.intel.com/en-us/intel-mkl/

Description: Intel Math Kernel Library is a library of highly optimized,extensively threaded math routines for science, engineering, and financialapplications that require maximum performance. Core math functions includeBLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.

Available versions: 11.2.3.187-iimpi-7.3.5-GNU-4.9.3-2.25, 11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25, 2017.1.132-iimpi-2017a, 11.3.3.210-iimpi-2016b

Command: module load imkl

impi
Homepage: http://software.intel.com/en-us/intel-mpi-library/

Description: The Intel(R) MPI Library for Linux* OS is a multi-fabric messagepassing library based on ANL MPICH2 and OSU MVAPICH2. The Intel MPI Library forLinux OS implements the Message Passing Interface, version 3.0 (MPI-3) specification.

Available versions: 5.0.3.048-iccifort-2015.3.187-GNU-4.9.3-2.25, 5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25, 2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27, 5.1.3.181-iccifort-2016.3.210-GCC-5.4.0-2.26

Command: module load impi

inputproto
Available versions: 2.3-foss-2016a, 2.3.1-foss-2015b, 2.3.1-foss-2016a, 2.3.1-foss-2016b, 2.3.1-goolf-1.7.20, 2.3.1-intel-2015b, 2.3.1-intel-2016a

Command: module load inputproto

intel
Available versions: 2015b, 2016a, 2017a, 2016b, mic/sdk/3.8.4

Command: module load intel

ITK
Homepage: https://itk.org

Description: Insight Segmentation and Registration Toolkit (ITK) providesan extensive suite of software tools for registering and segmentingmultidimensional imaging data.

Available versions: 4.12.2-foss-2016b-Python-2.7.12

Command: module load ITK

ICU
Homepage: http://site.icu-project.org/home

Description: ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalizationsupport for software applications.

Available versions: 61.1-GCCcore-6.4.0

Command: module load ICU

ipmitool
Available versions: 1.8.18

Command: module load ipmitool

intel-tbb-oss
Available versions: ia32/2018_20180618oss, intel64/2018_20180618oss

Command: module load intel-tbb-oss

iozone
Available versions: 3_471

Command: module load iozone

jspr
Available versions: 2017-7-20

Command: module load rc/jspr

JAGS
Available versions: 3.4.0-goolf-1.4.10

Command: module load JAGS

JUnit
Available versions: 4.12-Java-1.7.0_80, 4.12-Java-1.8.0_92

Command: module load JUnit

Java
Available versions: 1.7.0_10, 1.7.0_15, 1.7.0_21, 1.7.0_80, 1.8.0_112, 1.8.0_25, 1.8.0_45, 1.8.0_60, 1.8.0_72, 1.8.0_74, 1.8.0_92, 1.8.0_121, 1.8.0_144, 1.8.0_141, 1.8.0_152, 1.8.0_162, .modulerc

Command: module load Java

Jellyfish
Homepage: http://www.genome.umd.edu/jellyfish.html

Description: Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.

Available versions: 2.2.4-intel-2015b, 2.2.6-foss-2016b

Command: module load Jellyfish

jupyterhub
Available versions: 0.6.1-foss-2016a-Python-3.5.1

Command: module load jupyterhub

Kent_tools
Available versions: 340

Command: module load Kent_tools

Kerberos_V5
Available versions: 1.12.2-intel-2015b

Command: module load Kerberos_V5

kbproto
Available versions: 1.0.6-foss-2015b, 1.0.6-foss-2016a, 1.0.6-goolf-1.7.20, 1.0.6-intel-2016a, 1.0.7-foss-2016a, 1.0.7-foss-2016b, 1.0.7-goolf-1.7.20, 1.0.7-intel-2015b, 1.0.7-intel-2016a

Command: module load kbproto

KING
Homepage: http://people.virginia.edu/~wc9c/KING/

Description: KING is a toolset making use of high-throughput SNPdata typically seen in a genome-wide association study (GWAS) or asequencing project. Applications of KING include family relationshipinference and pedigree error checking, population substructureidentification, forensics, gene mapping, etc.

Available versions: 2.1.2-foss-2016a

Command: module load KING

kallisto
Homepage: http://pachterlab.github.io/kallisto/

Description: kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generallyof target sequences using high-throughput sequencing reads.

Available versions: 0.43.1-intel-2017a

Command: module load kallisto

lstc
Available versions: lsdyna

Command: module load rc/lstc

lumpy
Available versions: 0.2.13

Command: module load rc/lumpy

lcmodel
Available versions: 6.3

Command: module load rc/lcmodel

luajit
Available versions: 2.0.5

Command: module load rc/luajit

libarchive
Available versions: 3.1.2-10

Command: module load rc/libarchive

LAPACK
Available versions: 3.4.2-gompi-1.5.12

Command: module load LAPACK

LeadIT
Available versions: 2.1.9

Command: module load LeadIT

LibTIFF
Homepage: http://www.remotesensing.org/libtiff/

Description: tiff: Library and tools for reading and writing TIFF data files

Available versions: 4.0.3-foss-2016b, 4.0.4-goolf-1.7.20, 4.0.4-intel-2015b, 4.0.6-foss-2016b, 4.0.6-intel-2015b, 4.0.6-intel-2016a, 4.0.7-intel-2017a, 4.0.8-intel-2017a, 3.9.7-intel-2016a, 4.0.6-intel-2016b, 4.0.9-GCCcore-6.4.0, 4.0.7-foss-2016b, 4.0.9-GCCcore-5.4.0

Command: module load LibTIFF

Lmod
Available versions: 6.3-GCC-4.8.4

Command: module load Lmod

LocusZoom
Available versions: 1.3-goolf-1.7.20

Command: module load LocusZoom

Lua
Available versions: 5.1.4-8-GCC-4.8.4

Command: module load Lua

lftp
Available versions: 4.6.4-GNU-4.9.3-2.25

Command: module load lftp

libGLU
Homepage: ftp://ftp.freedesktop.org/pub/mesa/glu/

Description: The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

Available versions: 9.0.0-foss-2016b, 9.0.0-intel-2016a, 9.0.0-intel-2016a-Mesa-11.2.1, 9.0.0-intel-2017a, 9.0.0-foss-2018a

Command: module load libGLU

libICE
Available versions: 1.0.8-foss-2016a, 1.0.8-intel-2016a, 1.0.9-foss-2016a, 1.0.9-foss-2016b, 1.0.9-intel-2015b, 1.0.9-intel-2016a

Command: module load libICE

libSM
Available versions: 1.2.1-foss-2016a, 1.2.1-intel-2016a, 1.2.2-foss-2016a, 1.2.2-foss-2016b, 1.2.2-intel-2015b, 1.2.2-intel-2016a

Command: module load libSM

libX11
Available versions: 1.6.1-foss-2016a, 1.6.3-foss-2016a, 1.6.3-foss-2016b, 1.6.3-goolf-1.7.20, 1.6.3-goolf-1.7.20-Python-2.7.9, 1.6.3-intel-2015b, 1.6.3-intel-2015b-Python-2.7.10, 1.6.3-intel-2016a

Command: module load libX11

libXau
Available versions: 1.0.8-foss-2015b, 1.0.8-foss-2016a, 1.0.8-foss-2016b, 1.0.8-goolf-1.7.20, 1.0.8-intel-2015b, 1.0.8-intel-2016a

Command: module load libXau

libXcursor
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: X Cursor management library

Available versions: 1.1.14-intel-2016a, 1.1.14-foss-2016b

Command: module load libXcursor

libXdamage
Available versions: 1.1.4-foss-2016b, 1.1.4-goolf-1.7.20, 1.1.4-intel-2016a

Command: module load libXdamage

libXdmcp
Homepage: http://www.freedesktop.org/wiki/Software/xlibs}

Available versions: 1.1.1-intel-2016a, 1.1.2-foss-2015b, 1.1.2-foss-2016a, 1.1.2-foss-2016b, 1.1.2-goolf-1.7.20, 1.1.2-intel-2015b, 1.1.2-intel-2016a

Command: module load libXdmcp

libXext
Available versions: 1.3.3-foss-2016a, 1.3.3-foss-2016b, 1.3.3-goolf-1.7.20, 1.3.3-intel-2015b, 1.3.3-intel-2016a

Command: module load libXext

libXfixes
Available versions: 5.0.1-foss-2016b, 5.0.1-goolf-1.7.20, 5.0.1-intel-2015b, 5.0.1-intel-2016a

Command: module load libXfixes

libXfont
Available versions: 1.5.1-foss-2016b, 1.5.1-goolf-1.7.20, 1.5.1-intel-2016a, 1.5.1-intel-2016a-freetype-2.6.3

Command: module load libXfont

libXft
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: X11 client-side library

Available versions: 2.3.2-foss-2016a, 2.3.2-intel-2016a, 2.3.2-foss-2016b

Command: module load libXft

libXi
Available versions: 1.7.4-intel-2015b, 1.7.6-goolf-1.7.20, 1.7.6-intel-2016a

Command: module load libXi

libXinerama
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: Xinerama multiple monitor library

Available versions: 1.1.3-intel-2016a, 1.1.3-foss-2016b

Command: module load libXinerama

libXmu
Available versions: 1.1.2-foss-2016a, 1.1.2-intel-2016a

Command: module load libXmu

libXp
Available versions: 1.0.3-foss-2016a, 1.0.3-goolf-1.7.20, 1.0.3-intel-2016a

Command: module load libXp

libXpm
Available versions: 3.5.11-foss-2016a, 3.5.11-intel-2016a

Command: module load libXpm

libXrandr
Available versions: 1.5.0-goolf-1.7.20, 1.5.0-intel-2016a

Command: module load libXrandr

libXrender
Available versions: 0.9.9-foss-2016a, 0.9.9-foss-2016b, 0.9.9-goolf-1.7.20, 0.9.9-intel-2015b, 0.9.9-intel-2016a

Command: module load libXrender

libXt
Available versions: 1.1.4-foss-2016a, 1.1.5-foss-2016a, 1.1.5-foss-2016b, 1.1.5-intel-2015b, 1.1.5-intel-2016a

Command: module load libXt

libcerf
Available versions: 1.4-foss-2016b, 1.4-intel-2016a

Command: module load libcerf

libdrm
Homepage: http://dri.freedesktop.org

Description: Direct Rendering Manager runtime library.

Available versions: 2.4.67-foss-2016b, 2.4.67-goolf-1.7.20, 2.4.67-intel-2016a, 2.4.68-intel-2016a, 2.4.70-foss-2016b, 2.4.76-intel-2017a, 2.4.88-GCCcore-6.4.0, 2.4.91-GCCcore-6.4.0, 2.4.91-GCCcore-5.4.0

Command: module load libdrm

libfontenc
Available versions: 1.1.3-foss-2016b, 1.1.3-goolf-1.7.20, 1.1.3-intel-2016a

Command: module load libfontenc

libgcrypt
Homepage: https://gnupg.org/related_software/libgcrypt/index.html

Description: Libgpg-error is a small library that defines common error values for all GnuPG components.

Available versions: 1.6.5-intel-2016a, 1.6.5-foss-2016a, 1.6.5-intel-2017a

Command: module load libgcrypt

libgd
Homepage: https://libgd.github.io/

Description: GD is an open source code library for the dynamic creation of images by programmers.

Available versions: 2.1.0-intel-2016a, 2.1.1-foss-2016b, 2.1.1-intel-2016a, 2.2.3-intel-2016a, 2.2.4-intel-2017a

Command: module load libgd

libglade
Available versions: 2.6.4-intel-2016a

Command: module load libglade

libgpg-error
Homepage: https://gnupg.org/related_software/libgpg-error/index.html

Description: Libgpg-error is a small library that defines common error values for all GnuPG components.

Available versions: 1.21-intel-2016a, 1.21-foss-2016a, 1.21-foss-2016b, 1.21-intel-2017a

Command: module load libgpg-error

libgtextutils
Available versions: 0.6.1-intel-2015b

Command: module load libgtextutils

libidn
Available versions: 1.32-GNU-4.9.3-2.25

Command: module load libidn

libjpeg-turbo
Homepage: http://sourceforge.net/projects/libjpeg-turbo/

Description: libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD toaccelerate baseline JPEG compression and decompression. libjpeg is a librarythat implements JPEG image encoding, decoding and transcoding.

Available versions: 1.3.1-intel-2016a, 1.4.0-goolf-1.7.20, 1.4.1-foss-2015b, 1.4.2-foss-2016a, 1.4.2-foss-2016b, 1.4.2-intel-2015b, 1.4.2-intel-2016a, 1.5.0-foss-2016a, 1.5.0-foss-2016b, 1.5.0-intel-2015b, 1.5.0-intel-2016a, 1.5.1-intel-2017a, 1.5.2-GCCcore-6.3.0, 1.5.2-GCCcore-6.4.0, 1.5.0-intel-2017a, 1.5.0-intel-2016b, 1.5.3-GCCcore-6.4.0, 1.5.1-foss-2016b, 1.5.3-GCCcore-5.4.0

Command: module load libjpeg-turbo

libpciaccess
Available versions: 0.13.4-foss-2016b, 0.13.4-goolf-1.7.20, 0.13.4-intel-2016a

Command: module load libpciaccess

libpthread-stubs
Available versions: 0.3-foss-2015b, 0.3-foss-2016a, 0.3-foss-2016b, 0.3-goolf-1.7.20, 0.3-intel-2015b, 0.3-intel-2016a

Command: module load libpthread-stubs

libsodium
Available versions: 1.0.8-foss-2016a

Command: module load libsodium

libtasn1
Available versions: 4.7-GNU-4.9.3-2.25

Command: module load libtasn1

libtool
Homepage: http://www.gnu.org/software/libtool

Description: GNU libtool is a generic library support script. Libtool hides the complexity of using shared librariesbehind a consistent, portable interface.

Available versions: 2.4.2-foss-2016a, 2.4.2-intel-2016a, 2.4.5-GCC-4.8.4, 2.4.6, 2.4.6-GCC-4.8.4, 2.4.6-GCC-4.9.3-2.25, 2.4.6-GNU-4.9.3-2.25, 2.4.6-foss-2016a, 2.4.6-foss-2016b, 2.4.6-goolf-1.7.20, 2.4.6-intel-2015b, 2.4.6-intel-2016a, 2.4.6-GCCcore-6.3.0, 2.4.6-GCC-5.4.0-2.26, 2.4.6-intel-2017a, 2.4.6-GCCcore-6.4.0, 2.4.6-GCCcore-7.3.0, 2.4.6-GCCcore-5.4.0

Command: module load libtool

libunistring
Available versions: 0.9.3-GNU-4.9.3-2.25

Command: module load libunistring

libxcb
Available versions: 1.11-goolf-1.7.20-Python-2.7.9, 1.11.1-foss-2016a, 1.11.1-foss-2016b, 1.11.1-goolf-1.7.20, 1.11.1-intel-2015b, 1.11.1-intel-2015b-Python-2.7.10, 1.11.1-intel-2016a, 1.8-foss-2016a-Python-2.7.3

Command: module load libxcb

libxkbcommon
Available versions: 0.6.1-intel-2016a

Command: module load libxkbcommon

libxslt
Homepage: http://xmlsoft.org/

Description: Libxslt is the XSLT C library developed for the GNOME project(but usable outside of the Gnome platform).

Available versions: 1.1.28-intel-2016a, 1.1.28-foss-2016a, 1.1.29-intel-2016a, 1.1.32-intel-2016a, 1.1.29-intel-2017a

Command: module load libxslt

libsndfile
Homepage: http://www.mega-nerd.com/libsndfile

Description: Libsndfile is a C library for reading and writing files containing sampled sound(such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

Available versions: 1.0.28-intel-2017a, 1.0.28-GCCcore-6.4.0

Command: module load libsndfile

libyaml
Homepage: http://pyyaml.org/wiki/LibYAML

Description: LibYAML is a YAML 1.1 parser and emitter written in C.

Available versions: 0.1.6-intel-2016a, 0.1.6-intel-2017a, 0.1.7-intel-2016a

Command: module load libyaml

libspatialindex
Homepage: http://libspatialindex.github.io

Description: C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API

Available versions: 1.8.5-foss-2016b, 1.8.5-intel-2016a

Command: module load libspatialindex

libspatialite
Homepage: https://www.gaia-gis.it/fossil/libspatialite/home

Description: SpatiaLite is an open source library intended to extend the SQLite core to supportfully fledged Spatial SQL capabilities.

Available versions: 4.3.0a-foss-2016b, 4.3.0a-intel-2016a

Command: module load libspatialite

LoFreq
Homepage: http://csb5.github.io/lofreq

Description: Fast and sensitive variant calling from next-gen sequencing data

Available versions: 2.1.2-intel-2017a-Python-2.7.12

Command: module load LoFreq

LibUUID
Homepage: http://sourceforge.net/projects/libuuid/

Description: Portable uuid C library

Available versions: 1.0.3-foss-2016a

Command: module load LibUUID

LAME
Homepage: http://lame.sourceforge.net/

Description: LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.

Available versions: 3.99.5-foss-2016b

Command: module load LAME

LZO
Homepage: http://www.oberhumer.com/opensource/lzo/

Description: Portable lossless data compression library

Available versions: 2.10-foss-2016b

Command: module load LZO

libgeotiff
Homepage: https://directory.fsf.org/wiki/Libgeotiff

Description: Library for reading and writing coordinate system information from/to GeoTIFF files

Available versions: 1.4.2-foss-2018a

Command: module load libgeotiff

lua
Available versions: 5.3.4

Command: module load lua

lapack
Available versions: gcc/64/3.8.0

Command: module load lapack

MEGA2
Available versions: 4.9.1

Command: module load rc/MEGA2

Mathematica
Available versions: 10.3

Command: module load rc/Mathematica

manta
Available versions: 1.0.3

Command: module load rc/manta

mat
Available versions: test

Command: module load rc/mat

matlab
Available versions: R2012a, R2013a, R2015a, R2015b, R2016a, R2016b, R2017a, R2018a, R2017b, R2019a

Command: module load rc/matlab

metasv
Available versions: 0.5.2

Command: module load rc/metasv

mriconvert
Available versions: 2.0.8

Command: module load rc/mriconvert

maskface
Available versions: 12272017

Command: module load rc/maskface

M4
Homepage: http://www.gnu.org/software/m4/m4.html

Description: GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatiblealthough it has some extensions (for example, handling more than 9 positional parameters to macros).GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

Available versions: 1.4.16-foss-2016a, 1.4.17, 1.4.17-GCC-4.8.4, 1.4.17-GCC-4.9.3-2.25, 1.4.17-GCC-4.9.3-binutils-2.25, 1.4.17-GCCcore-4.9.3, 1.4.17-GCCcore-5.4.0, 1.4.17-GNU-4.9.3-2.25, 1.4.17-foss-2016a, 1.4.17-foss-2016b, 1.4.17-goolf-1.7.20, 1.4.17-intel-2015b, 1.4.17-intel-2016a, 1.4.18-GCCcore-6.3.0, 1.4.17-GCCcore-6.1.0, 1.4.17-GCC-5.4.0-2.26, 1.4.17-intel-2017a, 1.4.16, 1.4.18, 1.4.18-GCCcore-6.4.0, 1.4.18-GCCcore-7.3.0, 1.4.18-GCCcore-5.4.0

Command: module load M4

MACH
Available versions: 1.0.18

Command: module load MACH

MACS
Available versions: 1.4.2-1-goolf-1.7.20-Python-2.7.5

Command: module load MACS

MOSAIK
Homepage: https://code.google.com/p/mosaik-aligner/

Description: MOSAIK is a reference-guided aligner for next-generationsequencing technologies

Available versions: 2.2.28-intel-2016a-20140425-24cf06

Command: module load MOSAIK

MPICH
Available versions: 3.0.4-GCC-4.8.1

Command: module load MPICH

MRIcroGL
Available versions: 09302016

Command: module load MRIcroGL

MRIcron
Available versions: 06_22_15

Command: module load MRIcron

MRtrix
Available versions: 0.3.14-intel-2016a-Python-2.7.11, 0.3.16-intel-2016a-Python-2.7.11

Command: module load MRtrix

MUSCLE
Homepage: http://drive5.com/muscle/

Description: MUSCLE is one of the best-performing multiple alignment programsaccording to published benchmark tests, with accuracy and speed that are consistentlybetter than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most userslearn everything they need to know about MUSCLE in a few minutes—only a handful ofcommand-line options are needed to perform common alignment tasks.

Available versions: 3.8.31-intel-2016a

Command: module load MUSCLE

MVAPICH2
Available versions: 2.2b-GCC-4.9.3-2.25

Command: module load MVAPICH2

Maq
Available versions: 0.7.0

Command: module load Maq

Mathematica
Available versions: 11.0.1

Command: module load Mathematica

Maven
Homepage: http://maven.apache.org/index.html}

Available versions: 3.3.9

Command: module load Maven

Mercurial
Homepage: http://mercurial.selenic.com/

Description: Mercurial is a free, distributed source control management tool. It efficiently handles projectsof any size and offers an easy and intuitive interface.

Available versions: 2.5.2-goolf-1.7.20-Python-2.7.3, 3.8.3-foss-2016a-Python-2.7.11, 3.8.3-intel-2016a-Python-2.7.11, 3.2.4-foss-2015b-Python-2.7.9

Command: module load Mercurial

Mesa
Homepage: http://www.mesa3d.org/

Description: Mesa is an open-source implementation of the OpenGL specification -a system for rendering interactive 3D graphics.

Available versions: 11.1.2-intel-2016a, 11.2.1-intel-2016a, 12.0.2-foss-2016b, 17.0.2-intel-2017a, 17.3.6-foss-2018a, 11.1.2-foss-2016b

Command: module load Mesa

Minimac2
Available versions: 2014.9.15-intel-2015b

Command: module load Minimac2

Minimac3
Available versions: 1.0.10-intel-2015b

Command: module load Minimac3

makedepend
Homepage: http://www.linuxfromscratch.org/blfs/view/svn/x/makedepend.html

Description: The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.

Available versions: 1.0.5-intel-2016a, 1.0.5-foss-2016b

Command: module load makedepend

matplotlib
Homepage: http://matplotlib.org

Description: matplotlib is a python 2D plotting library which produces publication quality figures in a variety ofhardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the pythonand ipython shell, web application servers, and six graphical user interface toolkits.

Available versions: 1.3.1-intel-2015b-Python-2.7.8, 1.5.1-intel-2016a-Python-2.7.11, 1.5.3-foss-2016b-Python-2.7.12, 2.0.0-foss-2016b-Python-2.7.12, 2.0.2-foss-2016b-Python-2.7.12, 2.0.2-intel-2017a-Python-2.7.13-libpng-1.6.29, 1.5.1-foss-2016a-Python-2.7.11

Command: module load matplotlib

motif
Available versions: 2.3.5-foss-2016a, 2.3.5-intel-2016a, 2.3.7-intel-2016a

Command: module load motif

MACS2
Homepage: https://github.com/taoliu/MACS/

Description: Model Based Analysis for ChIP-Seq data

Available versions: 2.1.0.20150731-foss-2016a-Python-2.7.11, 2.1.1.20160309-foss-2016a-Python-2.7.11

Command: module load MACS2

MEME
Homepage: http://meme-suite.org/

Description: The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) orGLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs usingMAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associatemotifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichmentusing SpaMo or CentriMo.

Available versions: 4.12.0-foss-2016a

Command: module load MEME

MultiQC
Available versions: 0.9-foss-2016b-Python-2.7.12, 1.2-foss-2016b-Python-2.7.12, 1.4-foss-2016b-Python-2.7.12, 0.8, 0.8~

Command: module load MultiQC

Mono
Homepage: http://www.mono-project.com/

Description: An open source, cross-platform, implementation of C# and the CLR that isbinary compatible with Microsoft.NET.

Available versions: 4.8.0.495-intel-2017a, 5.2.0.224-intel-2017a

Command: module load Mono

MaSuRCA
Homepage: http://www.genome.umd.edu/masurca.html

Description: MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graphand Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containingonly short reads from Illumina sequencing or a mixture of short reads and long reads(Sanger, 454, Pacbio and Nanopore).

Available versions: 3.2.4-foss-2018a, 3.2.6-foss-2018a

Command: module load MaSuRCA

minimap2
Homepage: https://github.com/lh3/minimap2

Description: Minimap2 is a fast sequence mapping and alignment program that can find overlaps betweenlong noisy reads, or map long reads or their assemblies to a reference genome optionally with detailedalignment (i.e. CIGAR). At present, it works efficiently with query sequences from a few kilobases to~100 megabases in length at an error rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limitedtest data sets, minimap2 is over 20 times faster than most other long-read aligners. It will replaceBWA-MEM for long reads and contig alignment.

Available versions: 2.0rc1-foss-2016b

Command: module load minimap2

MotionCor2
Homepage: http://msg.ucsf.edu/em/software/motioncor2.html

Description: MotionCor2 is a multi-GPU program that corrects beam-induced sample motion recordedon dose fractionated movie stacks

Available versions: 1.0.4, 1.0.5

Command: module load MotionCor2

mpich
Available versions: ge/gcc/64/3.2.1

Command: module load mpich

mpiexec
Available versions: 0.84_432

Command: module load mpiexec

mvapich2
Available versions: gcc/64/2.3b

Command: module load mvapich2

NAMD
Available versions: 2.12b1-gpu, 2.12, 2.13b2-gpu

Command: module load rc/NAMD

nccl
Homepage: https://developer.nvidia.com/nccl

Description: The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs.

Available versions: 1.3.4-1

Command: module load rc/nccl

ncdu
Available versions: 1.13-20.1

Command: module load rc/ncdu

nighres
Available versions: 1.1.0b1

Command: module load rc/nighres

NASM
Homepage: http://www.nasm.us/

Description: NASM: General-purpose x86 assembler

Available versions: 2.07-intel-2015b, 2.07-intel-2016a, 2.11.06-goolf-1.7.20, 2.11.08-foss-2015b, 2.11.08-foss-2016a, 2.11.08-foss-2016b, 2.11.08-intel-2015b, 2.11.08-intel-2016a, 2.12.02-foss-2016a, 2.12.02-foss-2016b, 2.12.02-intel-2015b, 2.12.02-intel-2016a, 2.12.02-intel-2017a, 2.13.01-GCCcore-6.3.0, 2.13.01-GCCcore-6.4.0, 2.12.02-intel-2016b, 2.13.03-GCCcore-6.4.0, 2.13.03-GCCcore-5.4.0

Command: module load NASM

NGS
Available versions: 1.2.5-foss-2016b

Command: module load NGS

ncbi-vdb
Available versions: 2.7.0-foss-2016b

Command: module load ncbi-vdb

netCDF
Homepage: http://www.unidata.ucar.edu/software/netcdf/

Description: NetCDF (network Common Data Form) is a set of software librariesand machine-independent data formats that support the creation, access, and sharing of array-orientedscientific data.

Available versions: 4.3.3.1-foss-2016a, 4.3.3.1-intel-2016a, 4.4.0-intel-2016a, 4.4.1-foss-2016a, 4.4.1-foss-2016b, 4.4.1-intel-2015b, 4.4.1-intel-2016a, 4.4.1.1-intel-2017a, 4.4.1.1-foss-2016b, 4.4.1.1-intel-2016a, 4.6.0-foss-2018a

Command: module load netCDF

nodejs
Available versions: 4.4.7-foss-2016a

Command: module load nodejs

numactl
Homepage: http://oss.sgi.com/projects/libnuma/

Description: The numactl program allows you to run your application program on specificcpu's and memory nodes. It does this by supplying a NUMA memory policy tothe operating system before running your program. The libnuma library providesconvenient ways for you to add NUMA memory policies into your own program.

Available versions: 2.0.10-GCC-4.8.4, 2.0.10-GNU-4.9.3-2.25, 2.0.10-iccifort-2015.3.187-GNU-4.9.3-2.25, 2.0.11-GCC-4.9.3-2.25, 2.0.11-GCC-5.4.0-2.26, 2.0.11-GCCcore-6.3.0, 2.0.11-intel-2017a, 2.0.11-GCC-6.1.0-2.27, 2.0.11-GCC-6.3.0-2.27, 2.0.11-GCCcore-6.4.0, 2.0.11-intel-2016a, 2.0.11-GCCcore-7.3.0

Command: module load numactl

numpy
Homepage: http://www.numpy.org

Description: NumPy is the fundamental package for scientific computing with Python. It contains among other things:a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and Fortrancode, useful linear algebra, Fourier transform, and random number capabilities. Besides its obvious scientific uses,NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can bedefined. This allows NumPy to seamlessly and speedily integrate with a wide variety of databases.

Available versions: 1.10.4-intel-2016a-Python-2.7.11, 1.8.2-intel-2015b-Python-2.7.11, 1.8.2-foss-2016a-Python-2.7.11, 1.10.1-goolf-1.7.20-Python-2.7.11

Command: module load numpy

NLopt
Homepage: http://ab-initio.mit.edu/wiki/index.php/NLopt

Description: NLopt is a free/open-source library for nonlinear optimization,providing a common interface for a number of different free optimization routinesavailable online as well as original implementations of various other algorithms.

Available versions: 2.4.2-intel-2017a, 2.4.2-foss-2016b, 2.4.2-foss-2018a

Command: module load NLopt

NiBabel
Homepage: https://nipy.github.io/nibabel

Description: NiBabel provides read/write access to some common medical and neuroimaging file formats,including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECATas well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry andannotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

Available versions: 2.1.0-intel-2017a-Python-2.7.13

Command: module load NiBabel

ngmlr
Homepage: https://github.com/philres/ngmlr

Description: Ngmlr is a long-read mapper designed to align PacBilo or Oxford Nanopore to areference genome with a focus on reads that span structural variations.

Available versions: 0.2.6-foss-2016b

Command: module load ngmlr

NCBI-Toolkit
Homepage: http://ncbi.github.io/cxx-toolkit/

Description: The NCBI Toolkit is a collection of utilities developed for theproduction and distribution of GenBank, Entrez, BLAST, and related servicesby the National Center for Biotechnology Information.

Available versions: 18.0.0-intel-2017a

Command: module load NCBI-Toolkit

NCCL
Homepage: https://developer.nvidia.com/nccl

Description: The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collectivecommunication primitives that are performance optimized for NVIDIA GPUs.

Available versions: 2.2.13-CUDA-9.2.148.1, 2.2.13-CUDA-8.0.61

Command: module load NCCL

netcdf
Available versions: gcc/64/4.5.0

Command: module load netcdf

netperf
Available versions: 2.7.0

Command: module load netperf

openscenegraph
Available versions: 3.2.1

Command: module load rc/openscenegraph

OTF
Available versions: 1.12.4-gompi-1.5.12

Command: module load OTF

OpenPGM
Available versions: 5.2.122-foss-2016a, 5.2.122-intel-2015b

Command: module load OpenPGM

OpenSSL
Homepage: http://www.openssl.org/

Description: The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured,and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1)protocols as well as a full-strength general purpose cryptography library.

Available versions: 1.0.2g-GCCcore-4.9.3, 1.0.2h-foss-2016b

Command: module load OpenSSL

OpenMM
Homepage: https://simtk.org/home/openmm

Description: OpenMM is a toolkit for molecular simulation.

Available versions: 6.3-intel-2016a-Python-2.7.11

Command: module load OpenMM

openmpi
Available versions: mlnx/gcc/64/3.1.1rc1, gcc/64/1.10.7

Command: module load openmpi

openblas
Available versions: .version, dynamic/0.2.20

Command: module load openblas

parsync
Available versions: 1.69

Command: module load rc/parsync

PCRE
Homepage: http://www.pcre.org/

Description: The PCRE library is a set of functions that implement regular expressionpattern matching using the same syntax and semantics as Perl 5.

Available versions: 8.38-foss-2016a, 8.38-foss-2016b, 8.38-intel-2015b, 8.38-intel-2016a, 8.39-intel-2015b, 8.39-intel-2016a, 8.39-foss-2016b, 8.40-intel-2017a, 8.41-GCCcore-6.3.0, 8.12-goolf-1.4.10, 8.12-intel-2016a, 8.41-GCCcore-6.4.0, 8.39-intel-2016b, 8.40-foss-2016b, 8.41-GCCcore-5.4.0

Command: module load PCRE

PDT
Available versions: 3.20-goolf-1.7.20

Command: module load PDT

PETSc
Available versions: 3.6.3-intel-2015b-Python-2.7.11

Command: module load PETSc

PGI
Homepage: http://www.pgroup.com/

Description: C, C++ and Fortran compilers from The Portland Group - PGI

Available versions: 17.10-GCC-6.3.0-2.27, 17.4-GCC-6.3.0-2.27, 18.5-GCC-6.4.0-2.28

Command: module load PGI

PHASE
Available versions: 2.1.1

Command: module load PHASE

PIL
Available versions: 1.1.7-intel-2015b-Python-2.7.11, 1.1.7-intel-2016a-Python-2.7.11

Command: module load PIL

PROJ
Homepage: http://trac.osgeo.org/proj/

Description: Program proj is a standard Unix filter function which convertsgeographic longitude and latitude coordinates into cartesian coordinates

Available versions: 4.9.2-foss-2016a, 4.9.2-foss-2016b, 4.9.2-intel-2015b, 4.9.2-intel-2016a, 4.9.3-intel-2017a, 4.9.3-foss-2016b, 4.9.3-intel-2016a, 5.0.0-foss-2018a

Command: module load PROJ

Pango
Homepage: http://www.pango.org/

Description: Pango is a library for laying out and rendering of text, with an emphasis on internationalization.Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in thecontext of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.

Available versions: 1.39.0-foss-2016b, 1.39.0-intel-2016a, 1.40.1-intel-2016a, 1.40.12-intel-2017a

Command: module load Pango

Pindel
Homepage: http://gmt.genome.wustl.edu/packages/pindel/

Description: Pindel can detect breakpoints of large deletions, medium sizedinsertions, inversions, tandem duplications and other structural variants at single-basedresolution from next-gen sequence data. It uses a pattern growth approach to identify thebreakpoints of these variants from paired-end short reads.

Available versions: 0.2.5b8-foss-2016b

Command: module load Pindel

ProbABEL
Available versions: 0.5.0

Command: module load ProbABEL

PyCairo
Available versions: 1.10.0-intel-2016a-Python-2.7.11

Command: module load PyCairo

PyGObject
Available versions: 2.28.6-intel-2016a-Python-2.7.11

Command: module load PyGObject

PyGTK
Available versions: 2.24.0-intel-2016a-Python-2.7.11

Command: module load PyGTK

PyQt
Available versions: 4.11.3-goolf-1.7.20-Python-2.7.9, 4.11.4-foss-2016a-Python-2.7.11, 4.11.4-intel-2016a-Python-2.7.11

Command: module load PyQt

PyZMQ
Available versions: 14.7.0-intel-2015b-Python-2.7.9-zmq3, 15.3.0-foss-2016a-Python-3.5.1-zmq4

Command: module load PyZMQ

Pygments
Available versions: 2.0.2-intel-2015b-Python-2.7.9

Command: module load Pygments

Pysam
Available versions: 0.9.1.4-foss-2016a-Python-2.7.12, 0.9.1.4-foss-2016b-Python-2.7.12

Command: module load Pysam

p11-kit
Available versions: 0.23.2-GNU-4.9.3-2.25

Command: module load p11-kit

parallel
Available versions: 20150822-GCC-4.9.2

Command: module load parallel

path.py
Available versions: 8.2.1-foss-2016a-Python-3.5.1

Command: module load path.py

perl-app-cpanminus
Available versions: 1.7039

Command: module load perl-app-cpanminus

pixman
Homepage: http://www.pixman.org/

Description: Pixman is a low-level software library for pixel manipulation, providingfeatures such as image compositing and trapezoid rasterization. Importantusers of pixman are the cairo graphics library and the X server.

Available versions: 0.34.0-foss-2016b, 0.34.0-intel-2015b, 0.34.0-intel-2016a, 0.34.0-GCCcore-6.3.0, 0.34.0-GCCcore-6.4.0, 0.34.0-foss-2016a, 0.34.0-intel-2016b, 0.32.6-intel-2016a, 0.34.0-GCCcore-5.4.0

Command: module load pixman

pkgconfig
Available versions: 1.1.0-intel-2016a-Python-2.7.11

Command: module load pkgconfig

printproto
Available versions: 1.0.5-foss-2015b, 1.0.5-foss-2016a, 1.0.5-goolf-1.7.20, 1.0.5-intel-2016a

Command: module load printproto

prompt-toolkit
Available versions: 1.0.3-foss-2016a-Python-3.5.1

Command: module load prompt-toolkit

pysqlite
Available versions: 2.6.3-intel-2015b-Python-2.7.9

Command: module load pysqlite

protobuf
Homepage: https://github.com/google/protobuf/

Description: Google Protocol Buffers

Available versions: 3.3.0-intel-2017a

Command: module load protobuf

protobuf-python
Homepage: https://github.com/google/protobuf/

Description: Python Protocol Buffers runtime library.

Available versions: 3.3.0-intel-2017a-Python-3.6.1

Command: module load protobuf-python

PyYAML
Homepage: https://pypi.python.org/pypi/PyYAML/

Description: PyYAML is a YAML parser and emitter for the Python programming language.

Available versions: 3.12-intel-2016a-Python-3.5.1

Command: module load PyYAML

prodigal
Homepage: http://prodigal.ornl.gov/

Description: Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)is a microbial (bacterial and archaeal) gene finding program developedat Oak Ridge National Laboratory and the University of Tennessee.

Available versions: 2.6.2-GCC-4.9.3-binutils-2.25

Command: module load prodigal

Pillow
Homepage: http://pillow.readthedocs.org/

Description: Pillow is the 'friendly PIL fork' by Alex Clark and Contributors.PIL is the Python Imaging Library by Fredrik Lundh and Contributors.

Available versions: 4.3.0-intel-2017a-Python-2.7.13

Command: module load Pillow

p7zip
Homepage: http://p7zip.sourceforge.net/

Description: p7zip is a quick port of 7z.exe and 7za.exe (command line version of 7zip) for Unix.7-Zip is a file archiver with highest compression ratio.

Available versions: 9.38.1

Command: module load p7zip

patchelf
Homepage: http://nixos.org/patchelf.html

Description: PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.

Available versions: 0.9-intel-2016a, 0.9-foss-2016b

Command: module load patchelf

PCRE2
Homepage: http://www.pcre.org/

Description: The PCRE library is a set of functions that implement regular expression pattern matching using the same syntaxand semantics as Perl 5.

Available versions: 10.21-foss-2016b, 10.31-foss-2018a

Command: module load PCRE2

qdirstat
Available versions: 1.4

Command: module load rc/qdirstat

Qt
Available versions: 4.8.6-goolf-1.7.20, 4.8.7-foss-2016a, 4.8.7-foss-2016b, 4.8.7-intel-2016a

Command: module load Qt

Qwt
Homepage: http://qwt.sourceforge.net/

Description: The Qwt library contains GUI Components and utility classes which are primarily useful for programswith a technical background.

Available versions: 6.1.3-foss-2016b, 6.1.3-intel-2016a

Command: module load Qwt

QwtPolar
Homepage: http://qwtpolar.sourceforge.net/

Description: The QwtPolar library contains classes for displaying values on a polar coordinate system.

Available versions: 1.1.1-foss-2016b, 1.1.1-intel-2016a

Command: module load QwtPolar

QUAST
Homepage: http://quast.sourceforge.net/quast

Description: QUAST evaluates genome assemblies.

Available versions: 4.4-foss-2016a-Python-2.7.11, 4.6.3-foss-2016a-Python-2.7.11

Command: module load QUAST

QIIME
Available versions: qiime-dependencies

Command: module load QIIME

QWRAP
Available versions: v3

Command: module load QWRAP

RStudio
Available versions: 1.0.136, 1.0.44

Command: module load rc/RStudio

relion
Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page

Description: RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computerprogram that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D classaverages in electron cryo-microscopy (cryo-EM).

Available versions: 1.4, 2.0_beta, 2.1

Command: module load rc/relion

rserver
Available versions: 3.4.3, 3.5.2, 3.5.2_X11

Command: module load rc/rserver

R
Available versions: 2.15.3-goolf-1.7.20, 3.0.1-goolf-1.4.10-bare, 3.2.0-goolf-1.7.20, 3.2.1-goolf-1.7.20, 3.2.3-foss-2016a-bare, 3.2.3-intel-2016a-bare, 3.3.1-foss-2016b, 3.3.1-foss-2016b-no-X, 3.3.1-intel-2016a-bare, 3.4.1-intel-2017a-X11-20170314, 3.3.3-intel-2017a-X11-20170314, 3.4.3-intel-2017a-X11-20170314, .3.4.3-foss-2016b-X11-20160819.bak_20180502163551, 3.4.3-foss-2016b-X11-20160819, 3.5.0-intel-2017a-X11-20170314-bare, 3.5.0-foss-2018a-X11-20180131-bare, 3.5.1-foss-2018a-X11-20180131-bare, DESeq2.R-3.3.1-foss-2016b-no-X, DESeq2.R-3.4.3-intel-2017a-X11-20170314

Command: module load R

RAxML
Available versions: 8.1.1-goolf-1.4.10-mt-avx

Command: module load RAxML

RSeQC
Available versions: 2.6.3-goolf-1.7.20-Python-2.7.10-R-3.2.1

Command: module load RSeQC

Ruby
Available versions: 2.3.3

Command: module load Ruby

randrproto
Available versions: 1.5.0-goolf-1.7.20, 1.5.0-intel-2015b, 1.5.0-intel-2016a

Command: module load randrproto

renderproto
Available versions: 0.11-foss-2016a, 0.11-foss-2016b, 0.11-goolf-1.7.20, 0.11-intel-2015b, 0.11-intel-2016a

Command: module load renderproto

requests
Available versions: 2.7.0-intel-2015b-Python-2.7.9

Command: module load requests

ResMap
Homepage: http://resmap.sourceforge.net/

Description: ResMap (Resolution Map) is a Python (NumPy/SciPy) application with a Tkinter GUI.It is an easy to use software package for computing the local resolution of 3D density mapsstudied in structural biology, primarily electron cryo-microscopy (cryo-EM).

Available versions: 1.1.4

Command: module load ResMap

RELION
Homepage: http://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page

Description: RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computerprogram that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D classaverages in electron cryo-microscopy (cryo-EM).

Available versions: 2.1-intel-2016a-CUDA-8.0.44

Command: module load RELION

Rust
Homepage: https://www.rust-lang.org

Description: Rust is a systems programming language that runs blazingly fast, prevents segfaults,and guarantees thread safety.

Available versions: 1.30.1-foss-2016b

Command: module load Rust

snakemakeslurm_local
Available versions: 4.8.0-1

Command: module load snakemakeslurm_local

SAS
Available versions: v9.4

Command: module load rc/SAS

Salmon
Available versions: 0.7.2

Command: module load rc/Salmon

soapsv
Available versions: 1.3

Command: module load rc/soapsv

snakemake
Available versions: 4.0.0, 4.8.0

Command: module load rc/snakemake

sublime_text
Available versions: 3

Command: module load rc/sublime_text

S.A.G.E.
Available versions: 6.3

Command: module load S.A.G.E.

SCOTCH
Available versions: 6.0.4-intel-2015b

Command: module load SCOTCH

SHRiMP
Available versions: 2.2.3-goolf-1.4.10

Command: module load SHRiMP

SIP
Available versions: 4.16.4-goolf-1.7.20-Python-2.7.9, 4.16.4-intel-2015b-Python-2.7.9, 4.16.8-intel-2015b-Python-2.7.9, 4.18-foss-2016a-Python-2.7.11, 4.18-intel-2016a-Python-2.7.11

Command: module load SIP

SOLAR-Eclipse
Available versions: 8.1.1

Command: module load SOLAR-Eclipse

SPAdes
Homepage: http://cab.spbu.ru/software/spades/

Description: Genome assembler for single-cell and isolates data sets

Available versions: 3.9.0-foss-2016a, 3.12.0-foss-2016b

Command: module load SPAdes

SPPARKS
Available versions: 07192016-intel-2016a

Command: module load SPPARKS

STAR-Fusion
Available versions: 0.8.0-goolf-1.4.10-Perl-5.16.3

Command: module load STAR-Fusion

STAR
Available versions: 2.5.1b-goolf-1.4.10, 2.5.2a-foss-2016a, 2.5.4b-intel-2017a, 2.5.4b-foss-2016b, 2.5.2b, 2.5.2b~

Command: module load STAR

SWIG
Homepage: http://www.swig.org/

Description: SWIG is a software development tool that connects programs written in C and C++ witha variety of high-level programming languages.

Available versions: 3.0.10-intel-2016a-Python-2.7.12-PCRE-8.39, 3.0.12-intel-2017a-Python-2.7.13, 3.0.11-foss-2016b-Python-2.7.12, 3.0.11-intel-2016a-Python-2.7.12, 3.0.8-intel-2016a-Python-2.7.11, 3.0.12-foss-2018a-Python-3.6.4, 3.0.12-foss-2018a-Python-2.7.14

Command: module load SWIG

ScientificPython
Available versions: 2.9.4-intel-2015b-Python-2.7.11

Command: module load ScientificPython

Spack
Available versions: 0.10.0

Command: module load Spack

scipy
Available versions: 0.17.0-intel-2016a-Python-2.7.11

Command: module load scipy

shapeit
Available versions: 2.r837.GLIBCv2.12_linux_x86_64

Command: module load shapeit

sympy
Available versions: 0.7.6.1-intel-2015b-Python-2.7.11

Command: module load sympy

SRA-Toolkit
Homepage: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=std

Description: The NCBI SRA Toolkit enables reading (dumping) of sequencing filesfrom the SRA database and writing (loading) files into the .sra format

Available versions: 2.5.4-1-centos_linux64, 2.8.2-1-centos_linux64

Command: module load SRA-Toolkit

sparsehash
Homepage: https://code.google.com/p/sparsehash/

Description: An extremely memory-efficient hash_mapimplementation. 2 bits/entry overhead! The SparseHash librarycontains several hash-map implementations, includingimplementations that optimize for space or speed.

Available versions: 2.0.2-foss-2016a

Command: module load sparsehash

Spark
Homepage: http://spark.apache.org

Description: Spark is Hadoop MapReduce done in memory

Available versions: 2.2.0-Hadoop-2.6-Java-1.8.0_144

Command: module load Spark

summovie
Homepage: http://grigoriefflab.janelia.org/unblur

Description: Movie frame sums can be calculated using summovie,which uses the alignment results from a prior run of Unblur.

Available versions: 1.0.2

Command: module load summovie

snakemakeslurm
Available versions: 4.8.0, 4.8.0-2, 4.8.0-1

Command: module load snakemakeslurm

scalapack
Available versions: openmpi/gcc/64/2.0.2

Command: module load scalapack

sge
Available versions: 2011.11p1

Command: module load sge

slurm
Available versions: 17.11.8

Command: module load slurm

tortoise
Available versions: 2.5.2b, 3.0.0, 3.1.2

Command: module load rc/tortoise

transdecoder
Available versions: 5.3.0

Command: module load rc/transdecoder

torch
Available versions: 7

Command: module load rc/torch

tarquin
Available versions: 4.3.10

Command: module load rc/tarquin

tcllib
Available versions: 1.19

Command: module load rc/tcllib

Tar
Available versions: 1.29-goolf-1.4.10

Command: module load Tar

Tk
Homepage: http://www.tcl.tk/

Description: Tk is an open source, cross-platform widget toolchain that provides a library of basic elements forbuilding a graphical user interface (GUI) in many different programming languages.

Available versions: 8.6.3-foss-2015b-no-X11, 8.6.3-goolf-1.7.20-no-X11, 8.6.3-intel-2015b-no-X11, 8.6.4-foss-2015b-no-X11, 8.6.4-foss-2016a-no-X11, 8.6.4-foss-2016b-no-X11, 8.6.4-goolf-1.7.20, 8.6.4-goolf-1.7.20-no-X11, 8.6.4-intel-2015b-no-X11, 8.6.4-intel-2016a-no-X11, 8.6.5-foss-2016a, 8.6.5-foss-2016b, 8.6.5-intel-2015b, 8.6.5-intel-2016a, 8.6.6-intel-2017a, 8.6.5-intel-2017a, 8.6.8-foss-2018a

Command: module load Tk

TopHat
Available versions: 2.1.0-intel-2015b, 2.1.1-foss-2016a

Command: module load TopHat

Trim_Galore
Available versions: 0.4.2-foss-2016b, 0.4.4-foss-2016b

Command: module load Trim_Galore

Trimmomatic
Available versions: 0.36-Java-1.8.0_92

Command: module load Trimmomatic

Trinity
Available versions: 2.2.0-foss-2016a

Command: module load Trinity

tabix
Available versions: 0.2.6-goolf-1.7.20, 0.2.6-intel-2015b

Command: module load tabix

tcsh
Available versions: 6.18.01-goolf-1.7.20, 6.18.01-intel-2015b, 6.19.00-foss-2015b, 6.19.00-foss-2016a, 6.19.00-foss-2016b, 6.19.00-intel-2016a

Command: module load tcsh

testpath
Available versions: 0.3-foss-2016a-Python-3.5.1

Command: module load testpath

texinfo
Homepage: https://www.gnu.org/software/texinfo/

Description: Texinfo is the official documentation format of the GNU project.

Available versions: 4.13a, 6.4-GCCcore-5.4.0

Command: module load texinfo

Tensorflow
Homepage: https://www.tensorflow.org/

Description: An open-source software library for Machine Intelligence

Available versions: 1.2.0-intel-2017a-Python-3.6.1

Command: module load Tensorflow

TransDecoder
Homepage: https://github.com/TransDecoder/TransDecoder/wiki

Description: TransDecoder identifies candidate coding regions within transcript sequences,such as those generated by de novo RNA-Seq transcript assembly using Trinity,or constructed based on RNA-Seq alignments to the genome usingTophat and Cufflinks.

Available versions: 5.1.0-intel-2017a-Perl-5.24.1

Command: module load TransDecoder

trim_galore
Available versions: 0.4.2, 0.4.2~

Command: module load trim_galore

torque
Available versions: 6.1.1

Command: module load torque

unblur
Homepage: http://grigoriefflab.janelia.org/unblur

Description: Unblur is used to align the frames of movies recorded on an electron microscopeto reduce image blurring due to beam-induced motion.It reads stacks of movies that are stored in MRC/CCP4 format.

Available versions: 1.0.2

Command: module load unblur

usearch
Available versions: 7.0.1090

Command: module load usearch

vmd
Available versions: 1.9.3

Command: module load rc/vmd

VEGAS
Available versions: 0.8.27

Command: module load VEGAS

VICUNA
Available versions: 1.3

Command: module load VICUNA

VPhaser-2
Available versions: 02112013-intel-2016a

Command: module load VPhaser-2

VTK
Homepage: http://www.vtk.org

Description: The Visualization Toolkit (VTK) is an open-source, freely available software system for3D computer graphics, image processing and visualization. VTK consists of a C++ class library and severalinterpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualizationalgorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniquessuch as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.

Available versions: 7.1.1-intel-2017a-Python-2.7.13, 6.3.0-foss-2016b-Python-2.7.12

Command: module load VTK

VCFtools
Homepage: https://vcftools.github.io

Description: The aim of VCFtools is to provideeasily accessible methods for working with complexgenetic variation data in the form of VCF files.

Available versions: 0.1.14-intel-2016a-Perl-5.22.1, 0.1.15-intel-2016a-Perl-5.22.1

Command: module load VCFtools

wcwidth
Available versions: 0.1.7-foss-2016a-Python-3.5.1

Command: module load wcwidth

wxPython
Homepage: http://www.wxpython.org

Description: wxPython is a GUI toolkit for the Python programming language.It allows Python programmers to create programs with a robust,highly functional graphical user interface, simply and easily.It is implemented as a Python extension module (native code)that wraps the popular wxWidgets cross platform GUI library,which is written in C++.

Available versions: 3.0.2.0-intel-2017a-Python-2.7.13

Command: module load wxPython

wxWidgets
Homepage: http://www.wxwidgets.org/

Description: wxWidgets is a C++ library that lets developers create applications for Windows,Mac OS X, Linux and other platforms with a single code base.It has language bindings for Python, Perl, Ruby and many other languages.

Available versions: 3.0.3-intel-2016a, 3.0.3-foss-2016b

Command: module load wxWidgets

xget
Available versions: xget-public

Command: module load rc/xget

XKeyboardConfig
Available versions: 2.17-intel-2016a

Command: module load XKeyboardConfig

xbitmaps
Available versions: 1.1.1-foss-2016a, 1.1.1-intel-2016a

Command: module load xbitmaps

xcb-proto
Available versions: 1.11, 1.11-goolf-1.7.20-Python-2.7.9, 1.11-intel-2015b-Python-2.7.10, 1.7-foss-2016a-Python-2.7.3

Command: module load xcb-proto

xcb-util-image
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a

Command: module load xcb-util-image

xcb-util-keysyms
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a

Command: module load xcb-util-keysyms

xcb-util-renderutil
Available versions: 0.3.9-intel-2015b, 0.3.9-intel-2016a

Command: module load xcb-util-renderutil

xcb-util-wm
Available versions: 0.4.1-intel-2015b, 0.4.1-intel-2016a

Command: module load xcb-util-wm

xcb-util
Available versions: 0.4.0-intel-2015b, 0.4.0-intel-2016a

Command: module load xcb-util

xextproto
Available versions: 7.2.1-foss-2016a, 7.2.1-intel-2016a, 7.3.0-foss-2015b, 7.3.0-foss-2016a, 7.3.0-foss-2016b, 7.3.0-goolf-1.7.20, 7.3.0-intel-2015b, 7.3.0-intel-2016a

Command: module load xextproto

xf86vidmodeproto
Available versions: 2.3.1-intel-2016a

Command: module load xf86vidmodeproto

xineramaproto
Homepage: http://www.freedesktop.org/wiki/Software/xlibs

Description: X protocol and ancillary headers for xinerama

Available versions: 1.2.1-intel-2016a, 1.2.1-foss-2016b

Command: module load xineramaproto

xorg-macros
Available versions: 1.19.0-foss-2016a, 1.19.0-foss-2016b, 1.19.0-goolf-1.7.20, 1.19.0-intel-2016a

Command: module load xorg-macros

xprop
Homepage: http://www.x.org/wiki/

Description: The xprop utility is for displaying window and font properties in an X server.One window or font is selected using the command line arguments or possiblyin the case of a window, by clicking on the desired window. A list ofproperties is then given, possibly with formatting information.

Available versions: 1.2.2-intel-2016a, 1.2.2-intel-2017a, 1.2.2-foss-2016b

Command: module load xprop

xproto
Available versions: 7.0.23-foss-2016a, 7.0.26-intel-2016a, 7.0.27-foss-2015b, 7.0.27-goolf-1.7.20, 7.0.28-foss-2016a, 7.0.28-foss-2016b, 7.0.28-goolf-1.7.20, 7.0.28-intel-2015b, 7.0.28-intel-2016a

Command: module load xproto

xtrans
Homepage: http://www.freedesktop.org/wiki/Software/xlibs}

Available versions: 1.2-foss-2016a, 1.3.4-intel-2016a, 1.3.5-foss-2015b, 1.3.5-foss-2016a, 1.3.5-foss-2016b, 1.3.5-goolf-1.7.20, 1.3.5-intel-2015b, 1.3.5-intel-2016a

Command: module load xtrans

Xerces-C++
Homepage: http://xerces.apache.org/xerces-c/

Description: Xerces-C++ is a validating XML parser written in a portablesubset of C++. Xerces-C++ makes it easy to give your application the ability toread and write XML data. A shared library is provided for parsing, generating,manipulating, and validating XML documents using the DOM, SAX, and SAX2APIs.

Available versions: 3.1.2-intel-2015b

Command: module load Xerces-C++

XQilla
Homepage: http://xqilla.sourceforge.net/HomePage

Description: XQilla is an XQuery and XPath 2 library and command line utility written in C++,implemented on top of the Xerces-C++ library.

Available versions: 2.3.2-intel-2015b

Command: module load XQilla

x264
Homepage: http://www.videolan.org/developers/x264.html

Description: x264 is a free software library and application for encoding video streams into the H.264/MPEG-4AVC compression format, and is released under the terms of the GNU GPL.

Available versions: 20160614-foss-2016b

Command: module load x264

x265
Homepage: http://x265.org/

Description: x265 is a free software library and application for encoding video streams into the H.265AVC compression format, and is released under the terms of the GNU GPL.

Available versions: 2.4-foss-2016b

Command: module load x265

Yasm
Homepage: http://www.tortall.net/projects/yasm/

Description: Yasm: Complete rewrite of the NASM assembler with BSD license

Available versions: 1.3.0-intel-2015b, 1.3.0-foss-2016b

Command: module load Yasm

zlib
Homepage: http://www.zlib.net/

Description: zlib is designed to be a free, general-purpose, legally unencumbered -- that is,not covered by any patents -- lossless data-compression library for use on virtually anycomputer hardware and operating system.

Available versions: 1.2.10, 1.2.11-GCCcore-6.3.0, 1.2.11-intel-2016a, 1.2.5-goolf-1.4.10, 1.2.5-goolf-1.7.20, 1.2.7-foss-2016a, 1.2.7-goolf-1.4.10, 1.2.7-goolf-1.7.20, 1.2.7-intel-2015b, 1.2.7-intel-2016a, 1.2.8, 1.2.8-GCC-4.9.3-binutils-2.25, 1.2.8-GCCcore-4.9.3, 1.2.8-GCCcore-5.4.0, 1.2.8-GNU-4.9.3-2.25, 1.2.8-foss-2015b, 1.2.8-foss-2016a, 1.2.8-foss-2016b, 1.2.8-goolf-1.4.10, 1.2.8-goolf-1.7.20, 1.2.8-intel-2015b, 1.2.8-intel-2016a, 1.2.8-GCCcore-6.1.0, 1.2.8-intel-2017a, 1.2.11, 1.2.11-GCCcore-6.4.0, 1.2.8-intel-2016b, 1.2.11-GCCcore-7.3.0, 1.2.11-GCCcore-5.4.0, 1.2.9-intel-2017a

Command: module load zlib

ZeroMQ
Available versions: 3.2.5-intel-2015b, 4.1.4-foss-2016a

Command: module load ZeroMQ

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