VEGAS

VEGAS is a free program for performing gene-based tests for association using the results from genetic association studies. After reading in SNP association p-values, it will annotate SNPs according to their position in genes, produce a gene-based test statistic, and then use simulation to calculate an empirical gene-based p-value.

Project website: http://gump.qimr.edu.au/VEGAS/

Load SGE module
The following Modules files should be loaded for this package: module load VEGAS/VEGAS-0.8